CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96377
KRG96405
KRH31921
KRH68108
KRH68142
KRH71533

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	KRG96377	AT3G62980.1	12682009
AT4G36800.1	KRH31921	AT3G62980.1	12682009
AT4G36800.1	KRH68108	AT3G62980.1	12682009
AT4G36800.1	KRH71533	AT3G62980.1	12682009
AT4G36800.1	KRG96405	AT4G02570.1	12682009
AT4G36800.1	KRH68142	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28611	Soybean	cytosol	100.0	100.0
Solyc04g079970.2.1	Tomato	cytosol	87.98	87.98
PGSC0003DMT400039878	Potato	cytosol	87.43	87.43
AT4G36800.1	Thale cress	cytosol	87.43	86.96
Bra010575.1-P	Field mustard	cytosol	87.43	86.49
Bra011708.1-P	Field mustard	cytosol	87.43	86.49
VIT_04s0023g01280.t01	Wine grape	cytosol	86.34	86.34
Solyc12g089030.1.1	Tomato	cytosol	85.79	85.79
Bra014836.1-P	Field mustard	cytosol	87.43	85.56
Bra017784.1-P	Field mustard	cytosol	86.34	84.49
Bra038542.1-P	Field mustard	cytosol	82.51	82.07
GSMUA_Achr6P08850_001	Banana	cytosol	78.69	78.69
Bra036361.1-P	Field mustard	cytosol	83.61	77.27
VIT_03s0063g02110.t01	Wine grape	golgi	90.71	77.21
Os10t0190000-02	Rice	cytosol, nucleus	77.6	77.17
GSMUA_Achr3P13610_001	Banana	cytosol	77.05	77.05
EER88903	Sorghum	cytosol	76.5	76.5
AT2G18600.1	Thale cress	cytosol, nucleus, plastid	77.05	76.22
TraesCS5A01G182800.1	Wheat	cytosol	73.77	73.77
TraesCS5D01G187200.1	Wheat	cytosol	73.77	73.77
HORVU5Hr1G055840.2	Barley	cytosol	73.77	73.77
TraesCS6A01G016200.1	Wheat	cytosol	73.77	73.77
TraesCS6B01G023900.1	Wheat	cytosol	73.77	73.77
TraesCS6D01G019200.1	Wheat	cytosol	73.77	73.77
TraesCS5B01G180900.1	Wheat	cytosol	73.22	73.22
HORVU6Hr1G003170.2	Barley	mitochondrion	73.77	71.81
Zm00001d036481_P001	Maize	cytosol	77.05	70.85
EES13692	Sorghum	cytosol	69.95	69.95
Os09t0321900-01	Rice	plastid	67.21	67.21
CDY30311	Canola	mitochondrion	82.51	65.09
PGSC0003DMT400071582	Potato	cytosol	74.32	61.26
GSMUA_Achr2P23180_001	Banana	cytosol	80.33	59.76
CDY51497	Canola	nucleus	81.97	58.14
Os08t0374100-01	Rice	cytosol, nucleus	73.22	57.76
Zm00001d014671_P001	Maize	nucleus	65.57	25.42

Protein Annotations

EntrezGene:100783122	EntrezGene:100813186	MapMan:19.2.2.3.4	Gene3D:3.10.110.10	EMBL:ACUP02000645	EMBL:ACUP02006760
EMBL:BT089092	EMBL:BT097238	UniProt:C6SV99	EnsemblPlantsGene:GLYMA_01G178200	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0019788	GO:GO:0045116	InterPro:IPR000608	InterPro:IPR016135	ProteinID:KRH28610.1
ProteinID:KRH28611.1	ProteinID:KRH28612.1	EnsemblPlants:KRH76867	ProteinID:KRH76867	ProteinID:KRH76867.1	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43953	PANTHER:PTHR43953:SF4	MetaCyc:PWY-7511	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001B15576	:

Description

hypothetical protein

Coordinates

chr1:-:51449613..51452715

Molecular Weight (calculated)

20866.1 Da

IEP (calculated)

7.964

GRAVY (calculated)

-0.439

Length

183 amino acids

Sequence
(BLAST)

001: MIKLFKVKEK QRELAENASG GPPVKKQSAG ELRLHKDISE LNLPKSCTMQ FPNGKDDLMN FEVSIRPDDG YYLGGTFLFS FQVSPIYPHE APKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTVI YGLYHLFTEP NYEDPLNHDA AAVLRENPKM FESNVRRAMA GGYVGQTFFP RCI

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.