Factsheet for Bra014836.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003518.1-P
Bra007720.1-P
Bra014378.1-P
Bra015396.1-P
Bra020995.1-P
Bra032482.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	Bra015396.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra020995.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra032482.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra003518.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra007720.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra014378.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra000874.1-P	AT4G02570.1	12682009
AT4G36800.1	Bra036257.1-P	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017784.1-P	Field mustard	cytosol	98.93	98.93
Bra010575.1-P	Field mustard	cytosol	96.79	97.84
Bra011708.1-P	Field mustard	cytosol	96.26	97.3
AT4G36800.1	Thale cress	cytosol	95.19	96.74
Bra036361.1-P	Field mustard	cytosol	96.26	90.91
KRH76867	Soybean	cytosol	85.56	87.43
KRH28611	Soybean	cytosol	85.56	87.43
Bra038542.1-P	Field mustard	cytosol	82.89	84.24
Solyc04g079970.2.1	Tomato	cytosol	80.21	81.97
PGSC0003DMT400039878	Potato	cytosol	79.68	81.42
VIT_04s0023g01280.t01	Wine grape	cytosol	79.68	81.42
Solyc12g089030.1.1	Tomato	cytosol	79.68	81.42
GSMUA_Achr6P08850_001	Banana	cytosol	75.94	77.6
Os10t0190000-02	Rice	cytosol, nucleus	75.94	77.17
EER88903	Sorghum	cytosol	74.33	75.96
GSMUA_Achr3P13610_001	Banana	cytosol	73.26	74.86
TraesCS5A01G182800.1	Wheat	cytosol	71.12	72.68
TraesCS5D01G187200.1	Wheat	cytosol	71.12	72.68
TraesCS6B01G023900.1	Wheat	cytosol	70.59	72.13
TraesCS6A01G016200.1	Wheat	cytosol	70.59	72.13
TraesCS6D01G019200.1	Wheat	cytosol	70.59	72.13
HORVU5Hr1G055840.2	Barley	cytosol	70.59	72.13
TraesCS5B01G180900.1	Wheat	cytosol	70.59	72.13
VIT_03s0063g02110.t01	Wine grape	golgi	82.89	72.09
Zm00001d036481_P001	Maize	cytosol	74.87	70.35
HORVU6Hr1G003170.2	Barley	mitochondrion	70.59	70.21
EES13692	Sorghum	cytosol	67.91	69.4
Os09t0321900-01	Rice	plastid	63.1	64.48
GSMUA_Achr2P23180_001	Banana	cytosol	77.54	58.94
PGSC0003DMT400071582	Potato	cytosol	68.45	57.66
Os08t0374100-01	Rice	cytosol, nucleus	70.05	56.47
Zm00001d014671_P001	Maize	nucleus	64.17	25.42

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra014836	EnsemblPlants:Bra014836.1	EnsemblPlants:Bra014836.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4DEB5	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43953
PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00025450A2	:	:	:	:	:

Description

AT4G36800 (E=2e-103) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase

Coordinates

chrA04:+:3520240..3521137

Molecular Weight (calculated)

21002.0 Da

IEP (calculated)

7.983

GRAVY (calculated)

-0.482

Length

187 amino acids

Sequence
(BLAST)

001: MIGLFKVKEK QREQAQNASR GGGGGASVKK QSAGELRLHK DISELNLPSS CTISFPNGKD DLMNFEVSIK PDDGYYHNGT FAFTFQVSPV YPHEAPKVKC
101: KTKVYHPNID LEGNVCLNIL REDWKPVLNI NTVIYGLFHL FTEPNSEDPL NHEAAQVLRD NPKLFETNVR RAMTGGYVGQ TFFPRCI

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.