Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0104g01320.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36800.1 | VIT_07s0104g01320.t01 | AT3G62980.1 | 12682009 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g089030.1.1 | Tomato | cytosol | 86.34 | 86.34 |
| Solyc04g079970.2.1 | Tomato | cytosol | 86.34 | 86.34 |
| KRH76867 | Soybean | cytosol | 86.34 | 86.34 |
| KRH28611 | Soybean | cytosol | 86.34 | 86.34 |
| PGSC0003DMT400039878 | Potato | cytosol | 85.79 | 85.79 |
| AT4G36800.1 | Thale cress | cytosol | 81.97 | 81.52 |
| Bra010575.1-P | Field mustard | cytosol | 80.87 | 80.0 |
| Bra038542.1-P | Field mustard | cytosol | 80.33 | 79.89 |
| Bra014836.1-P | Field mustard | cytosol | 81.42 | 79.68 |
| Bra011708.1-P | Field mustard | cytosol | 80.33 | 79.46 |
| Os10t0190000-02 | Rice | cytosol, nucleus | 79.78 | 79.35 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 78.69 | 78.69 |
| Bra017784.1-P | Field mustard | cytosol | 80.33 | 78.61 |
| EER88903 | Sorghum | cytosol | 78.14 | 78.14 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 75.96 | 75.96 |
| VIT_03s0063g02110.t01 | Wine grape | golgi | 89.07 | 75.81 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 75.96 | 75.14 |
| TraesCS6D01G019200.1 | Wheat | cytosol | 73.77 | 73.77 |
| TraesCS6B01G023900.1 | Wheat | cytosol | 73.77 | 73.77 |
| TraesCS6A01G016200.1 | Wheat | cytosol | 73.77 | 73.77 |
| Bra036361.1-P | Field mustard | cytosol | 79.23 | 73.23 |
| TraesCS5A01G182800.1 | Wheat | cytosol | 73.22 | 73.22 |
| TraesCS5D01G187200.1 | Wheat | cytosol | 73.22 | 73.22 |
| HORVU5Hr1G055840.2 | Barley | cytosol | 73.22 | 73.22 |
| TraesCS5B01G180900.1 | Wheat | cytosol | 72.68 | 72.68 |
| Zm00001d036481_P001 | Maize | cytosol | 78.69 | 72.36 |
| HORVU6Hr1G003170.2 | Barley | mitochondrion | 73.77 | 71.81 |
| EES13692 | Sorghum | cytosol | 71.58 | 71.58 |
| Os09t0321900-01 | Rice | plastid | 68.31 | 68.31 |
| VIT_18s0001g12010.t01 | Wine grape | cytosol | 72.68 | 67.51 |
| CDY30311 | Canola | mitochondrion | 80.33 | 63.36 |
| PGSC0003DMT400071582 | Potato | cytosol | 74.32 | 61.26 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 80.33 | 59.76 |
| Os08t0374100-01 | Rice | cytosol, nucleus | 74.32 | 58.62 |
| CDY51497 | Canola | nucleus | 79.78 | 56.59 |
| Zm00001d014671_P001 | Maize | nucleus | 66.12 | 25.64 |
Protein Annotations
| EntrezGene:100259910 | wikigene:100259910 | MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | ProteinID:CBI17566 | ProteinID:CBI17566.3 |
| UniProt:D7SPI7 | EMBL:FN594959 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019788 |
| GO:GO:0045116 | InterPro:IPR000608 | InterPro:IPR016135 | EntrezGene:LOC100259910 | wikigene:LOC100259910 | PFAM:PF00179 |
| ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43953 | PANTHER:PTHR43953:SF4 | SMART:SM00212 | SUPFAM:SSF54495 |
| TIGR:TC52145 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00015CB1A5 | ArrayExpress:VIT_04s0023g01280 |
| EnsemblPlantsGene:VIT_04s0023g01280 | EnsemblPlants:VIT_04s0023g01280.t01 | unigene:Vvi.920 | RefSeq:XP_002273417 | RefSeq:XP_002273417.1 | : |
Description
No Description!
Coordinates
chr4:-:17682486..17684686
Molecular Weight (calculated)
20899.2 Da
IEP (calculated)
8.604
GRAVY (calculated)
-0.405
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKLFKVKER QREIAESANG RAPVKKQTAG ELRLHKDISE LNLPKSCSIL FPNGKDDLMN FEVVIRPDEG YYLGGTFNFS FQVNSIYPHE APKVKCKTKV
101: YHPNIDLEGN VCLNILREDW KPVLNINTII YGLYHLFTQP NHEDPLNHEA AAVLRDNPKL FESNVRRAMA GGYVGQISFP RCL
101: YHPNIDLEGN VCLNILREDW KPVLNINTII YGLYHLFTQP NHEDPLNHEA AAVLRDNPKL FESNVRRAMA GGYVGQISFP RCL
001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
Arabidopsis Description
RCE2Probable NEDD8-conjugating enzyme Ubc12-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU75]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.