Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0104g01320.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36800.1 | VIT_07s0104g01320.t01 | AT3G62980.1 | 12682009 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g079970.2.1 | Tomato | cytosol | 77.21 | 90.71 |
| KRH76867 | Soybean | cytosol | 77.21 | 90.71 |
| KRH28611 | Soybean | cytosol | 77.21 | 90.71 |
| VIT_04s0023g01280.t01 | Wine grape | cytosol | 75.81 | 89.07 |
| Solyc12g089030.1.1 | Tomato | cytosol | 74.88 | 87.98 |
| PGSC0003DMT400039878 | Potato | cytosol | 74.88 | 87.98 |
| AT4G36800.1 | Thale cress | cytosol | 73.49 | 85.87 |
| Bra010575.1-P | Field mustard | cytosol | 73.02 | 84.86 |
| Bra011708.1-P | Field mustard | cytosol | 72.09 | 83.78 |
| Bra038542.1-P | Field mustard | cytosol | 71.16 | 83.15 |
| Bra014836.1-P | Field mustard | cytosol | 72.09 | 82.89 |
| Bra017784.1-P | Field mustard | cytosol | 71.16 | 81.82 |
| GSMUA_Achr6P08850_001 | Banana | cytosol | 68.84 | 80.87 |
| Os10t0190000-02 | Rice | cytosol, nucleus | 68.84 | 80.43 |
| EER88903 | Sorghum | cytosol | 68.37 | 80.33 |
| AT2G18600.1 | Thale cress | cytosol, nucleus, plastid | 67.44 | 78.38 |
| GSMUA_Achr3P13610_001 | Banana | cytosol | 66.51 | 78.14 |
| TraesCS6D01G019200.1 | Wheat | cytosol | 65.58 | 77.05 |
| TraesCS6B01G023900.1 | Wheat | cytosol | 65.58 | 77.05 |
| TraesCS6A01G016200.1 | Wheat | cytosol | 65.58 | 77.05 |
| Zm00001d036481_P001 | Maize | cytosol | 71.16 | 76.88 |
| TraesCS5A01G182800.1 | Wheat | cytosol | 65.12 | 76.5 |
| TraesCS5D01G187200.1 | Wheat | cytosol | 65.12 | 76.5 |
| HORVU5Hr1G055840.2 | Barley | cytosol | 65.12 | 76.5 |
| HORVU6Hr1G003170.2 | Barley | mitochondrion | 66.51 | 76.06 |
| TraesCS5B01G180900.1 | Wheat | cytosol | 64.65 | 75.96 |
| Bra036361.1-P | Field mustard | cytosol | 69.3 | 75.25 |
| EES13692 | Sorghum | cytosol | 63.72 | 74.86 |
| Os09t0321900-01 | Rice | plastid | 60.0 | 70.49 |
| VIT_18s0001g12010.t01 | Wine grape | cytosol | 62.33 | 68.02 |
| CDY30311 | Canola | mitochondrion | 72.09 | 66.81 |
| PGSC0003DMT400071582 | Potato | cytosol | 65.58 | 63.51 |
| Os08t0374100-01 | Rice | cytosol, nucleus | 66.98 | 62.07 |
| GSMUA_Achr2P23180_001 | Banana | cytosol | 70.7 | 61.79 |
| CDY51497 | Canola | nucleus | 71.16 | 59.3 |
| Zm00001d014671_P001 | Maize | nucleus | 59.07 | 26.91 |
Protein Annotations
| EntrezGene:100255479 | wikigene:100255479 | MapMan:19.2.2.3.4 | Gene3D:3.10.110.10 | EMBL:AM427084 | ProteinID:CAN82178 |
| ProteinID:CAN82178.1 | ProteinID:CCB56956 | ProteinID:CCB56956.1 | UniProt:F6HQJ9 | EMBL:FN596006 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019788 | GO:GO:0045116 |
| InterPro:IPR000608 | InterPro:IPR016135 | EntrezGene:LOC100255479 | wikigene:LOC100255479 | PFAM:PF00179 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR43953 | PANTHER:PTHR43953:SF4 | SMART:SM00212 | SUPFAM:SSF54495 | TMHMM:TMhelix |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000210936A | ArrayExpress:VIT_03s0063g02110 | EnsemblPlantsGene:VIT_03s0063g02110 |
| EnsemblPlants:VIT_03s0063g02110.t01 | RefSeq:XP_003631628 | RefSeq:XP_003631628.1 | RefSeq:XP_003631629 | RefSeq:XP_003631629.1 | : |
Description
No Description!
Coordinates
chr3:+:5405380..5409507
Molecular Weight (calculated)
24645.3 Da
IEP (calculated)
9.174
GRAVY (calculated)
-0.123
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRVGIVCVF VFRAFDLFGY ILMLLPKIFS RKMIKLFKVK EKQREIAENA NGKAPVKKQS AGELRLHKDI SELNLPKTCC ISFPNGKDDL MSFEVTIRPD
101: EGYYLGGTFV FSFQVSPIYP HEAPKVKCKT KVYHPNIDLE GNVCLNILRE DWKPVLNINT IIYGLFHLFT QPNYEDPLNH DAAAVLRDNP KMFESNVRRA
201: MAGGYVGQTF FPRCM
101: EGYYLGGTFV FSFQVSPIYP HEAPKVKCKT KVYHPNIDLE GNVCLNILRE DWKPVLNINT IIYGLFHLFT QPNYEDPLNH DAAAVLRDNP KMFESNVRRA
201: MAGGYVGQTF FPRCM
001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI
Arabidopsis Description
RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.