Factsheet for Bra011708.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003518.1-P
Bra007720.1-P
Bra014378.1-P
Bra015396.1-P
Bra020995.1-P
Bra032482.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36800.1	Bra015396.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra020995.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra032482.1-P	AT1G05180.1	12682009
AT4G36800.1	Bra003518.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra007720.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra014378.1-P	AT3G62980.1	12682009
AT4G36800.1	Bra000874.1-P	AT4G02570.1	12682009
AT4G36800.1	Bra036257.1-P	AT4G02570.1	12682009

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010575.1-P	Field mustard	cytosol	98.92	98.92
AT4G36800.1	Thale cress	cytosol	96.76	97.28
Bra014836.1-P	Field mustard	cytosol	97.3	96.26
Bra017784.1-P	Field mustard	cytosol	96.22	95.19
KRH76867	Soybean	cytosol	86.49	87.43
KRH28611	Soybean	cytosol	86.49	87.43
Bra036361.1-P	Field mustard	cytosol	93.51	87.37
Bra038542.1-P	Field mustard	cytosol	83.78	84.24
Solyc04g079970.2.1	Tomato	cytosol	81.08	81.97
VIT_04s0023g01280.t01	Wine grape	cytosol	79.46	80.33
PGSC0003DMT400039878	Potato	cytosol	79.46	80.33
Solyc12g089030.1.1	Tomato	cytosol	79.46	80.33
GSMUA_Achr6P08850_001	Banana	cytosol	76.76	77.6
Os10t0190000-02	Rice	cytosol, nucleus	75.68	76.09
EER88903	Sorghum	cytosol	74.05	74.86
GSMUA_Achr3P13610_001	Banana	cytosol	73.51	74.32
VIT_03s0063g02110.t01	Wine grape	golgi	83.78	72.09
TraesCS5A01G182800.1	Wheat	cytosol	70.81	71.58
TraesCS5D01G187200.1	Wheat	cytosol	70.81	71.58
TraesCS6B01G023900.1	Wheat	cytosol	70.27	71.04
TraesCS6D01G019200.1	Wheat	cytosol	70.27	71.04
TraesCS6A01G016200.1	Wheat	cytosol	70.27	71.04
HORVU5Hr1G055840.2	Barley	cytosol	70.27	71.04
TraesCS5B01G180900.1	Wheat	cytosol	70.27	71.04
Zm00001d036481_P001	Maize	cytosol	74.59	69.35
HORVU6Hr1G003170.2	Barley	mitochondrion	70.27	69.15
EES13692	Sorghum	cytosol	68.11	68.85
Os09t0321900-01	Rice	plastid	63.78	64.48
GSMUA_Achr2P23180_001	Banana	cytosol	77.84	58.54
PGSC0003DMT400071582	Potato	cytosol	69.19	57.66
Os08t0374100-01	Rice	cytosol, nucleus	69.73	55.6
Zm00001d014671_P001	Maize	nucleus	63.78	25.0

Protein Annotations

MapMan:19.2.2.3.4	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra011708	EnsemblPlants:Bra011708.1	EnsemblPlants:Bra011708.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4D5F1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43953
PANTHER:PTHR43953:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00025469AD	:	:	:	:	:

Description

AT4G36800 (E=9e-104) RCE1 | RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase

Coordinates

chrA01:+:946917..947819

Molecular Weight (calculated)

20888.9 Da

IEP (calculated)

7.983

GRAVY (calculated)

-0.458

Length

185 amino acids

Sequence
(BLAST)

001: MIGLFKVKEK QREQAQNASR GGGASVKKQS AGELRLHKDI SELNLPSSCT ISFPNGKDDL MNFEVSIKPD DGYYHNGTFL FTFQVSPVYP HEAPKVKCKT
101: KVYHPNIDLE GSVCLNILRE DWKPVLNINT VIYGLFHLFT EPNSEDPLNH DAAQVLRDNP KLFETNVRRA MTGGYVGQTF FPRCI

Best Arabidopsis Sequence Match ( AT4G36800.1 )
(BLAST)

001: MIGLFKVKEK QREQAQNATR GGASVKKQSA GELRLHKDIS ELNLPSSCSI SFPNGKDDLM NFEVSIKPDD GYYHNGTFVF TFQVSPVYPH EAPKVKCKTK
101: VYHPNIDLEG NVCLNILRED WKPVLNINTV IYGLFHLFTE PNSEDPLNHD AAAVLRDNPK LFETNVRRAM TGGYVGQTFF PRCI

Arabidopsis Description

RCE1NEDD8-conjugating enzyme Ubc12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.