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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001900.1-P
Bra003735.1-P nucleus
Bra008231.1-P nucleus
Bra010575.1-P
Bra011708.1-P
Bra012213.1-P nucleus, nucleus
Bra012214.1-P nucleus, nucleus
Bra012216.1-P nucleus, nucleus
Bra014519.1-P nucleus
Bra014836.1-P
Bra015298.1-P
Bra015801.1-P nucleus
Bra017784.1-P
Bra025795.1-P nucleus, nucleus
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035858.1-P
Bra036361.1-P
Bra038607.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62980.1 Bra015298.1-P AT1G04250.1 11713520
AT3G62980.1 Bra030560.1-P AT1G04250.1 11713520
AT3G62980.1 Bra032520.1-P AT1G04250.1 11713520
AT3G62980.1 Bra012213.1-P AT1G20140.1 23226441
AT3G62980.1 Bra012214.1-P AT1G20140.1 23226441
AT3G62980.1 Bra012216.1-P AT1G20140.1 23226441
AT3G62980.1 Bra025795.1-P AT1G20140.1 23226441
AT3G62980.1 Bra003735.1-P AT1G75950.1 10398681
AT3G62980.1 Bra008231.1-P AT1G75950.1 10398681
AT3G62980.1 Bra015801.1-P AT1G75950.1 10398681
AT3G62980.1 Bra003735.1-P AT1G75950.1 12795696
AT3G62980.1 Bra008231.1-P AT1G75950.1 12795696
AT3G62980.1 Bra015801.1-P AT1G75950.1 12795696
AT3G62980.1 Bra003735.1-P AT1G75950.1 23226441
AT3G62980.1 Bra008231.1-P AT1G75950.1 23226441
AT3G62980.1 Bra015801.1-P AT1G75950.1 23226441
AT3G62980.1 Bra012213.1-P AT2G25700.1 23226441
AT3G62980.1 Bra012214.1-P AT2G25700.1 23226441
AT3G62980.1 Bra012216.1-P AT2G25700.1 23226441
AT3G62980.1 Bra025795.1-P AT2G25700.1 23226441
AT3G62980.1 Bra014519.1-P AT3G21850.1 12795696
AT3G62980.1 Bra014519.1-P AT3G21850.1 23226441
AT3G62980.1 Bra001900.1-P AT3G23050.1 11713520
AT3G62980.1 Bra033886.1-P AT3G23050.1 11713520
AT3G62980.1 Bra039732.1-P AT4G14560.1 15546359
AT3G62980.1 Bra010575.1-P AT4G36800.1 12682009
AT3G62980.1 Bra011708.1-P AT4G36800.1 12682009
AT3G62980.1 Bra014836.1-P AT4G36800.1 12682009
AT3G62980.1 Bra017784.1-P AT4G36800.1 12682009
AT3G62980.1 Bra036361.1-P AT4G36800.1 12682009
AT3G62980.1 Bra035858.1-P AT5G63110.1 12445118
AT3G62980.1 Bra038607.1-P AT5G63110.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G62980.1 Thale cress cytosol 91.92 91.92
CDX67912 Canola endoplasmic reticulum, golgi 99.66 91.78
Bra007720.1-P Field mustard cytosol 91.41 91.26
Bra014378.1-P Field mustard cytosol 84.18 79.87
VIT_07s0104g01320.t01 Wine grape cytosol 76.6 78.99
KRH31921 Soybean cytosol 76.77 77.95
KRH71533 Soybean cytosol 76.77 77.95
Solyc09g074520.2.1 Tomato cytosol 75.59 77.28
Solyc06g008440.1.1 Tomato extracellular 8.25 76.56
PGSC0003DMT400029517 Potato cytosol 74.75 76.42
KRH68108 Soybean cytosol 75.25 76.28
KRG96377 Soybean cytosol 74.58 75.47
Solyc06g008470.1.1 Tomato extracellular 7.24 75.44
PGSC0003DMT400053430 Potato cytosol 33.33 73.61
PGSC0003DMT400056570 Potato cytosol 71.38 71.38
PGSC0003DMT400061752 Potato plastid 69.7 71.38
PGSC0003DMT400093216 Potato mitochondrion 18.35 71.24
Solyc06g008810.2.1 Tomato cytosol 48.15 67.93
Bra034191.1-P Field mustard cytosol 66.67 67.69
GSMUA_Achr5P26930_001 Banana cytosol 52.19 66.81
Bra000842.1-P Field mustard cytosol 65.82 66.72
Solyc06g008460.1.1 Tomato extracellular 26.6 66.67
PGSC0003DMT400013682 Potato cytosol, mitochondrion 15.66 66.43
GSMUA_Achr3P23850_001 Banana cytosol 61.78 63.06
PGSC0003DMT400008765 Potato cytosol 10.94 60.75
Bra032954.1-P Field mustard cytosol 57.91 59.83
Os05t0150500-00 Rice plastid 59.09 59.8
KXG21312 Sorghum plastid 59.43 59.73
Zm00001d010863_P001 Maize plastid 59.09 59.49
TraesCS1A01G091300.1 Wheat cytosol 58.75 58.95
TraesCS1B01G119100.1 Wheat cytosol, peroxisome, plastid 58.42 58.91
TraesCS1D01G099900.1 Wheat cytosol 58.59 58.0
Bra026953.1-P Field mustard cytosol 56.23 57.79
Bra016754.1-P Field mustard cytosol 57.24 57.63
Solyc06g008780.1.1 Tomato extracellular 47.64 57.06
Solyc05g009260.1.1 Tomato extracellular 7.41 54.32
HORVU1Hr1G021550.4 Barley cytosol 57.91 53.58
Solyc06g007840.2.1 Tomato extracellular, plastid 7.24 52.44
Solyc06g007830.1.1 Tomato endoplasmic reticulum, extracellular 9.6 50.0
Bra000604.1-P Field mustard cytosol, plastid 48.15 47.12
Bra013798.1-P Field mustard cytosol 46.63 45.63
Solyc06g084490.1.1 Tomato plastid 13.47 38.1
Bra000156.1-P Field mustard cytosol 31.82 32.03
Bra005000.1-P Field mustard cytosol 31.65 31.18
Bra017044.1-P Field mustard cytosol 29.97 29.47
Bra017045.1-P Field mustard cytosol 29.63 29.0
Protein Annotations
Gene3D:1.20.1280.50MapMan:11.2.2.1.1MapMan:19.2.2.8.1.4.6Gene3D:3.80.10.10EnsemblPlantsGene:Bra003518EnsemblPlants:Bra003518.1
EnsemblPlants:Bra003518.1-PInterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_Cys-con_subtypUniProt:M4CH35PFAM:PF12937
PANTHER:PTHR43944PANTHER:PTHR43944:SF7SMART:SM00256SMART:SM00367SUPFAM:SSF52047SUPFAM:SSF81383
UniParc:UPI0002541957:::::
Description
AT3G62980 (E=0.0) TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase
Coordinates
chrA07:-:13566359..13568669
Molecular Weight (calculated)
66769.2 Da
IEP (calculated)
7.749
GRAVY (calculated)
-0.014
Length
594 amino acids
Sequence
(BLAST)
001: MQKRIGLSFP EEVLEHVFSF IHHDKDRNSV SLVCKSWYEI ERWGRRRVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPEGWG GYVYPWIEAM
101: SKAYTWLEEI RLKRMVVSDE CLELIAKSFK NFKVLVLSSC DGFSTDGLAA IASTCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASDVCF
201: SALERLVSRC PNLKSLKLNR AVPLEKLATL LRRAPQLEEL GTGGYSADVR SDLFSDLYVA LSGCKKLKCL SGLWDAAPAY LPAVYSVCGR LTTLNLSYAT
301: VQSYDLVKLI TLCPKLQRLW VLDYIEDTGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSAG CPKLESVLYF CRQMTNDALV AIARKRPNMT
401: RFRLCIIEPK APDHLTLEPL DVGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGKYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGPPDSRPES CAVERVFIYR TVAGPRFDMP DFVWNMDQQS SMSVSRQIIT TNVL
Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)
001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
Arabidopsis Description
TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.