Factsheet for PGSC0003DMT400093216

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400034978
PGSC0003DMT400039878
PGSC0003DMT400042074
PGSC0003DMT400046818
PGSC0003DMT400071582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	PGSC0003DMT400015610	AT1G04250.1	11713520
AT3G62980.1	PGSC0003DMT400015610	AT3G23050.1	11713520
AT3G62980.1	PGSC0003DMT400015655	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400034978	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400042074	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400039878	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400071582	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400046818	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008765	Potato	cytosol	44.44	63.55
PGSC0003DMT400053430	Potato	cytosol	79.08	44.98
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	30.72	33.57
GSMUA_Achr5P26930_001	Banana	cytosol	66.01	21.77
PGSC0003DMT400056570	Potato	cytosol	79.74	20.54
PGSC0003DMT400061752	Potato	plastid	75.16	19.83
PGSC0003DMT400029517	Potato	cytosol	74.51	19.62
CDY68868	Canola	cytosol	67.97	19.26
CDY53998	Canola	cytosol	71.9	18.84
CDY11468	Canola	cytosol	73.2	18.82
KRH68108	Soybean	cytosol	71.9	18.77
AT3G62980.1	Thale cress	cytosol	72.55	18.69
Bra007720.1-P	Field mustard	cytosol	72.55	18.66
KRH31921	Soybean	cytosol	71.24	18.63
CDX76680	Canola	cytosol	71.9	18.49
Bra003518.1-P	Field mustard	cytosol	71.24	18.35
KRH71533	Soybean	cytosol	69.93	18.29
KRG96377	Soybean	cytosol	69.93	18.23
CDX67912	Canola	endoplasmic reticulum, golgi	71.24	16.9
GSMUA_Achr3P23850_001	Banana	cytosol	64.05	16.84
KXG21312	Sorghum	plastid	64.71	16.75
Os05t0150500-00	Rice	plastid	64.05	16.7
Zm00001d010863_P001	Maize	plastid	64.05	16.61
TraesCS1A01G091300.1	Wheat	cytosol	63.4	16.39
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	62.75	16.3
TraesCS1D01G099900.1	Wheat	cytosol	62.75	16.0
HORVU1Hr1G021550.4	Barley	cytosol	62.75	14.95
PGSC0003DMT400057711	Potato	cytosol	53.59	13.92
CDX89163	Canola	cytosol	47.71	11.66
Bra014378.1-P	Field mustard	cytosol	47.71	11.66
PGSC0003DMT400005419	Potato	cytosol	45.75	11.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400093216	EnsemblPlantsGene:PGSC0003DMG400042787	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	PGSC:PGSC0003DMG400042787	SUPFAM:SSF52047	UniParc:UPI000296C45B	UniProt:M1DRG9	MapMan:35.1

Description

Transport inhibitor response 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400042787]

Coordinates

chr6:+:987858..988319

Molecular Weight (calculated)

17196.2 Da

IEP (calculated)

7.894

GRAVY (calculated)

0.110

Length

153 amino acids

Sequence
(BLAST)

001: MTNNTLVTIA RNRPNMIQIR LCITEPQTHD YLTLEPLDAG FGDIVQHCKE LRRLSLSGLL TDRAFEYIGV LAKKLEMLSL AFVGDINLGL YYVLSGCESL
101: RKLEIRDCPF GDKALLANAA KLETMRSLWM SNCSVIFALK YLHHNGATPL HSL

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.