Factsheet for PGSC0003DMT400008765

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400034978
PGSC0003DMT400039878
PGSC0003DMT400042074
PGSC0003DMT400046818
PGSC0003DMT400071582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	PGSC0003DMT400015610	AT1G04250.1	11713520
AT3G62980.1	PGSC0003DMT400015610	AT3G23050.1	11713520
AT3G62980.1	PGSC0003DMT400015655	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400034978	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400042074	AT4G14560.1	15546359
AT3G62980.1	PGSC0003DMT400039878	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400071582	AT4G36800.1	12682009
AT3G62980.1	PGSC0003DMT400046818	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093216	Potato	mitochondrion	63.55	44.44
PGSC0003DMT400053430	Potato	cytosol	71.03	28.25
Solyc06g007840.2.1	Tomato	extracellular, plastid	17.76	23.17
Solyc05g009260.1.1	Tomato	extracellular	14.95	19.75
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	20.56	15.71
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	14.02	13.16
GSMUA_Achr5P26930_001	Banana	cytosol	57.01	13.15
PGSC0003DMT400056570	Potato	cytosol	71.03	12.79
PGSC0003DMT400029517	Potato	cytosol	63.55	11.7
PGSC0003DMT400061752	Potato	plastid	62.62	11.55
CDY68868	Canola	cytosol	57.94	11.48
CDY53998	Canola	cytosol	62.62	11.47
KRH31921	Soybean	cytosol	62.62	11.45
KRH68108	Soybean	cytosol	62.62	11.43
CDY11468	Canola	cytosol	61.68	11.09
Bra007720.1-P	Field mustard	cytosol	61.68	11.09
KRG96377	Soybean	cytosol	60.75	11.07
AT3G62980.1	Thale cress	cytosol	60.75	10.94
Bra003518.1-P	Field mustard	cytosol	60.75	10.94
KRH71533	Soybean	cytosol	59.81	10.94
CDX76680	Canola	cytosol	60.75	10.92
CDX89163	Canola	cytosol	61.68	10.54
Bra014378.1-P	Field mustard	cytosol	61.68	10.54
CDX67912	Canola	endoplasmic reticulum, golgi	60.75	10.08
Os05t0150500-00	Rice	plastid	55.14	10.05
Zm00001d010863_P001	Maize	plastid	55.14	10.0
KXG21312	Sorghum	plastid	55.14	9.98
GSMUA_Achr3P23850_001	Banana	cytosol	54.21	9.97
TraesCS1A01G091300.1	Wheat	cytosol	54.21	9.8
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	53.27	9.68
TraesCS1D01G099900.1	Wheat	cytosol	54.21	9.67
HORVU1Hr1G021550.4	Barley	cytosol	53.27	8.88
PGSC0003DMT400057711	Potato	cytosol	48.6	8.83
PGSC0003DMT400005419	Potato	cytosol	42.06	7.34
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	0.93	0.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400008765	EnsemblPlantsGene:PGSC0003DMG400003405	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	PGSC:PGSC0003DMG400003405	UniParc:UPI000295A7CF	UniProt:M0ZV20	MapMan:35.1	:

Description

TRANSPORT INHIBITOR RESPONSE 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003405]

Coordinates

chr6:+:2282248..2283142

Molecular Weight (calculated)

12127.7 Da

IEP (calculated)

6.335

GRAVY (calculated)

0.100

Length

107 amino acids

Sequence
(BLAST)

001: MTNDALVTIA RNHSNIIQFC LCIIKPQNPV TLEPLDADFG AIIQHCKELW QLSLSDLLTD RVFEYIRVHA KKLEMLSLAF PGDNHLDLHY ILSGVRASAS
101: WRLETAP

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.