Factsheet for Solyc06g007840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008440.1.1	Tomato	extracellular	24.39	31.25
PGSC0003DMT400008765	Potato	cytosol	23.17	17.76
Solyc06g008460.1.1	Tomato	extracellular	39.02	13.5
Solyc06g008810.2.1	Tomato	cytosol	51.22	9.98
CDY68868	Canola	cytosol	53.66	8.15
Solyc09g074520.2.1	Tomato	cytosol	56.1	7.92
Solyc06g008780.1.1	Tomato	extracellular	47.56	7.86
GSMUA_Achr5P26930_001	Banana	cytosol	43.9	7.76
CDY53998	Canola	cytosol	54.88	7.71
Bra007720.1-P	Field mustard	cytosol	54.88	7.56
CDY11468	Canola	cytosol	54.88	7.56
AT3G62980.1	Thale cress	cytosol	53.66	7.41
CDX76680	Canola	cytosol	53.66	7.39
Bra014378.1-P	Field mustard	cytosol	56.1	7.35
CDX89163	Canola	cytosol	56.1	7.35
Bra003518.1-P	Field mustard	cytosol	52.44	7.24
KRH31921	Soybean	cytosol	51.22	7.18
KRH68108	Soybean	cytosol	50.0	7.0
KRG96377	Soybean	cytosol	50.0	6.98
GSMUA_Achr3P23850_001	Banana	cytosol	48.78	6.87
KRH71533	Soybean	cytosol	48.78	6.84
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	48.78	6.79
TraesCS1A01G091300.1	Wheat	cytosol	48.78	6.76
TraesCS1D01G099900.1	Wheat	cytosol	48.78	6.67
CDX67912	Canola	endoplasmic reticulum, golgi	52.44	6.67
Os05t0150500-00	Rice	plastid	47.56	6.64
Zm00001d010863_P001	Maize	plastid	46.34	6.44
KXG21312	Sorghum	plastid	46.34	6.43
HORVU1Hr1G021550.4	Barley	cytosol	48.78	6.23
Solyc02g079190.2.1	Tomato	cytosol	41.46	5.79
Solyc04g074980.2.1	Tomato	cytosol	35.37	4.65
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	7.32	4.08
Solyc05g052620.2.1	Tomato	cytosol	26.83	3.65
Solyc06g084490.1.1	Tomato	plastid	4.88	1.9
Solyc05g009260.1.1	Tomato	extracellular	1.22	1.23
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	1.22	0.88
Solyc06g008470.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g007840.2.1	EnsemblPlantsGene:Solyc06g007840.2	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF7	UniParc:UPI0002766330	UniProt:K4C3G5	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:-:1748334..1749700

Molecular Weight (calculated)

9219.7 Da

IEP (calculated)

9.137

GRAVY (calculated)

0.561

Length

82 amino acids

Sequence
(BLAST)

1: MIGSCIRNFK SFRVFPSGPF APGLNVSLMK QDLVAVLMGF PNLQSVLYFC CQMTNDALVT IARNHCNMIQ FRLCVLSNLK LM

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.