CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112	nucleus
CDX73212	nucleus
CDX80590	nucleus
CDX84385
CDX85931	nucleus
CDX87650	nucleus
CDX89042	nucleus
CDX89832
CDX92973
CDY01389	nucleus, nucleus
CDY10068
CDY10349
CDY10694
CDY13521	nucleus
CDY15493
CDY16736
CDY18214
CDY29370	nucleus, nucleus
CDY30781
CDY32537
CDY36883
CDY39073	nucleus
CDY41500
CDY43408	nucleus, nucleus
CDY44209	nucleus, nucleus
CDY48127
CDY53735
CDY63072
CDY63159	nucleus, nucleus
CDY63910
CDY67544	nucleus, nucleus
CDY68971	nucleus, nucleus
CDY69121	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	CDX89832	AT1G04250.1	11713520
AT3G62980.1	CDY10068	AT1G04250.1	11713520
AT3G62980.1	CDY15493	AT1G04250.1	11713520
AT3G62980.1	CDY18214	AT1G04250.1	11713520
AT3G62980.1	CDY32537	AT1G04250.1	11713520
AT3G62980.1	CDY63072	AT1G04250.1	11713520
AT3G62980.1	CDY01389	AT1G20140.1	23226441
AT3G62980.1	CDY29370	AT1G20140.1	23226441
AT3G62980.1	CDY43408	AT1G20140.1	23226441
AT3G62980.1	CDY44209	AT1G20140.1	23226441
AT3G62980.1	CDY63159	AT1G20140.1	23226441
AT3G62980.1	CDY67544	AT1G20140.1	23226441
AT3G62980.1	CDY68971	AT1G20140.1	23226441
AT3G62980.1	CDX68112	AT1G75950.1	10398681
AT3G62980.1	CDX73212	AT1G75950.1	10398681
AT3G62980.1	CDX80590	AT1G75950.1	10398681
AT3G62980.1	CDX85931	AT1G75950.1	10398681
AT3G62980.1	CDX87650	AT1G75950.1	10398681
AT3G62980.1	CDY13521	AT1G75950.1	10398681
AT3G62980.1	CDY39073	AT1G75950.1	10398681
AT3G62980.1	CDX68112	AT1G75950.1	12795696
AT3G62980.1	CDX73212	AT1G75950.1	12795696
AT3G62980.1	CDX80590	AT1G75950.1	12795696
AT3G62980.1	CDX85931	AT1G75950.1	12795696
AT3G62980.1	CDX87650	AT1G75950.1	12795696
AT3G62980.1	CDY13521	AT1G75950.1	12795696
AT3G62980.1	CDY39073	AT1G75950.1	12795696
AT3G62980.1	CDX68112	AT1G75950.1	23226441
AT3G62980.1	CDX73212	AT1G75950.1	23226441
AT3G62980.1	CDX80590	AT1G75950.1	23226441
AT3G62980.1	CDX85931	AT1G75950.1	23226441
AT3G62980.1	CDX87650	AT1G75950.1	23226441
AT3G62980.1	CDY13521	AT1G75950.1	23226441
AT3G62980.1	CDY39073	AT1G75950.1	23226441
AT3G62980.1	CDY01389	AT2G25700.1	23226441
AT3G62980.1	CDY29370	AT2G25700.1	23226441
AT3G62980.1	CDY43408	AT2G25700.1	23226441
AT3G62980.1	CDY44209	AT2G25700.1	23226441
AT3G62980.1	CDY63159	AT2G25700.1	23226441
AT3G62980.1	CDY67544	AT2G25700.1	23226441
AT3G62980.1	CDY68971	AT2G25700.1	23226441
AT3G62980.1	CDX89042	AT3G21850.1	12795696
AT3G62980.1	CDY69121	AT3G21850.1	12795696
AT3G62980.1	CDX89042	AT3G21850.1	23226441
AT3G62980.1	CDY69121	AT3G21850.1	23226441
AT3G62980.1	CDX92973	AT3G23050.1	11713520
AT3G62980.1	CDY10349	AT3G23050.1	11713520
AT3G62980.1	CDY10694	AT3G23050.1	11713520
AT3G62980.1	CDY30781	AT3G23050.1	11713520
AT3G62980.1	CDY63910	AT3G23050.1	11713520
AT3G62980.1	CDY36883	AT4G14560.1	15546359
AT3G62980.1	CDY53735	AT4G14560.1	15546359
AT3G62980.1	CDX84385	AT5G63110.1	12445118
AT3G62980.1	CDY16736	AT5G63110.1	12445118
AT3G62980.1	CDY41500	AT5G63110.1	12445118
AT3G62980.1	CDY48127	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003518.1-P	Field mustard	cytosol	91.78	99.66
CDY53998	Canola	cytosol	88.99	98.29
CDY68868	Canola	cytosol	77.52	92.59
AT3G62980.1	Thale cress	cytosol	84.96	92.26
CDY11468	Canola	cytosol	84.81	91.93
CDX76680	Canola	cytosol	84.34	91.43
CDX89163	Canola	cytosol	77.36	79.71
VIT_07s0104g01320.t01	Wine grape	cytosol	70.54	78.99
KRH31921	Soybean	cytosol	70.85	78.12
KRH71533	Soybean	cytosol	70.85	78.12
Solyc09g074520.2.1	Tomato	cytosol	69.77	77.45
PGSC0003DMT400029517	Potato	cytosol	68.99	76.59
Solyc06g008440.1.1	Tomato	extracellular	7.6	76.56
KRH68108	Soybean	cytosol	69.46	76.45
KRG96377	Soybean	cytosol	68.84	75.64
Solyc06g008470.1.1	Tomato	extracellular	6.67	75.44
PGSC0003DMT400053430	Potato	cytosol	30.7	73.61
PGSC0003DMT400056570	Potato	cytosol	66.05	71.72
PGSC0003DMT400061752	Potato	plastid	64.19	71.38
PGSC0003DMT400093216	Potato	mitochondrion	16.9	71.24
Solyc06g008810.2.1	Tomato	cytosol	44.34	67.93
CDY53774	Canola	cytosol	61.09	67.24
GSMUA_Achr5P26930_001	Banana	cytosol	48.06	66.81
Solyc06g008460.1.1	Tomato	extracellular	24.5	66.67
CDX90899	Canola	cytosol	60.47	66.55
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	14.42	66.43
CDY21947	Canola	plastid, vacuole	61.86	63.74
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	62.64	63.22
GSMUA_Achr3P23850_001	Banana	cytosol	56.9	63.06
PGSC0003DMT400008765	Potato	cytosol	10.08	60.75
Os05t0150500-00	Rice	plastid	54.42	59.8
KXG21312	Sorghum	plastid	54.73	59.73
CDY28523	Canola	cytosol	53.18	59.65
Zm00001d010863_P001	Maize	plastid	54.42	59.49
CDY34211	Canola	cytosol	53.02	59.48
TraesCS1A01G091300.1	Wheat	cytosol	54.11	58.95
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	53.8	58.91
CDY31282	Canola	cytosol	53.02	58.26
TraesCS1D01G099900.1	Wheat	cytosol	53.95	58.0
CDY21068	Canola	cytosol	52.87	57.8
CDY16034	Canola	cytosol	51.78	57.69
CDX71968	Canola	cytosol	51.47	57.44
CDY26594	Canola	cytosol	51.32	57.27
Solyc06g008780.1.1	Tomato	extracellular	44.03	57.26
Solyc05g009260.1.1	Tomato	extracellular	6.82	54.32
HORVU1Hr1G021550.4	Barley	cytosol	53.33	53.58
Solyc06g007840.2.1	Tomato	extracellular, plastid	6.67	52.44
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	8.84	50.0
CDX97301	Canola	cytosol	7.13	50.0
CDY21439	Canola	cytosol	44.19	47.19
CDX83172	Canola	cytosol, plastid	44.34	47.12
CDY03450	Canola	cytosol	43.41	45.9
CDY34286	Canola	cytosol	42.95	45.48
Solyc06g084490.1.1	Tomato	plastid	12.4	38.1
CDY24941	Canola	cytosol	29.3	32.03
CDX74819	Canola	cytosol	28.99	31.17
CDY20501	Canola	cytosol	28.84	30.9
CDX93223	Canola	cytosol	28.06	30.63
CDY07041	Canola	cytosol	27.75	30.24
CDX93225	Canola	cytosol	27.44	29.8
CDY07040	Canola	cytosol	27.29	29.0
CDY60996	Canola	endoplasmic reticulum, golgi	29.3	26.88

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlants:CDX67912	ProteinID:CDX67912
ProteinID:CDX67912.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00099120001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
SignalP:SignalP-noTM	UniParc:UPI0004EECC63	SEG:seg	:	:	:

Description

BnaA07g19520D

Coordinates

chrLK031787:-:2858608..2862011

Molecular Weight (calculated)

72444.2 Da

IEP (calculated)

7.915

GRAVY (calculated)

0.051

Length

645 amino acids

Sequence
(BLAST)

001: MSALLTFLIL FKSPFNSLSL SLSPHHPQHS TFCFCIFSRS LLINHLPSPA AMQKRIGLSF PEEVLEHVFS FIHLDKDRNS VSLVCKSWYE IERWCRRRVF
101: IGNCYAVSPA TVIRRFPKVR SVELKGKPHF ADFNLVPEGW GGYVYPWIEA MSKAYTWLEE IRLKRMVVSD ECLELIAKSF KNFKVLVLSS CDGFSTDGLA
201: AIASTCRNLK ELDLRESDVD DVSGHWLSHF PDTYTSLVSL NISCLASDVC FSALERLVSR CPNLKSLKLN RAVPLEKLAT LLRRAPQLEE LGTGGYSADV
301: RSDLFSDLYV ALSGCKKLKC LSGLWDAAPA YLPAVYSVCG RLTTLNLSYA TVQSYDLVKL ITLCPKLQRL WVLDYIEDTG LEVLASTCKD LRELRVFPSE
401: PFVMEPNVAL TEQGLVSVSA GCPKLESVLY FCRQMTNDAL VAIARKRPNM TRFRLCIIEP KAPDHLTLEP LDVGFGAIVE HCKDLRRLSL SGLLTDKVFE
501: YIGKYAKKME MLSVAFAGDS DLGMHHVLSG CDSLRKLEIR DCPFGDKALL ANASKLETMR SLWMSSCSVS FGACKLLGQK MPKLNVEVID ERGPPDSRPE
601: SCAVERVFIY RTVAGPRFDM PDFVWNMDQQ SSMSVSRQII TTNVL

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.