Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89042 | Canola | cytosol | 96.95 | 79.87 |
| AT3G21840.1 | Thale cress | cytosol | 57.25 | 60.0 |
| AT3G53060.1 | Thale cress | cytosol | 36.64 | 56.47 |
| CDX68112 | Canola | cytosol | 63.36 | 54.97 |
| CDX85931 | Canola | cytosol | 63.36 | 54.97 |
| AT3G21860.1 | Thale cress | cytosol | 63.36 | 54.61 |
| CDX87650 | Canola | cytosol | 66.41 | 54.04 |
| CDX73212 | Canola | cytosol | 65.65 | 53.42 |
| CDY40611 | Canola | cytosol | 61.07 | 53.33 |
| CDY39073 | Canola | cytosol | 64.89 | 53.12 |
| CDY13521 | Canola | cytosol | 64.89 | 53.12 |
| CDY40610 | Canola | cytosol | 61.83 | 51.92 |
| CDX93698 | Canola | cytosol | 61.83 | 51.92 |
| AT3G21850.1 | Thale cress | cytosol | 60.31 | 51.63 |
| CDX93699 | Canola | cytosol | 60.31 | 49.38 |
| AT3G21830.1 | Thale cress | cytosol | 55.73 | 48.03 |
| CDY44209 | Canola | cytosol | 56.49 | 45.96 |
| AT3G60020.1 | Thale cress | cytosol | 53.44 | 45.75 |
| CDX77280 | Canola | cytosol | 54.96 | 45.28 |
| CDY67544 | Canola | cytosol | 54.96 | 44.72 |
| CDY63159 | Canola | cytosol | 54.96 | 44.72 |
| CDY29370 | Canola | cytosol | 54.96 | 44.72 |
| CDY16470 | Canola | cytosol | 54.2 | 44.65 |
| CDY45767 | Canola | cytosol | 51.91 | 44.16 |
| CDY03015 | Canola | cytosol | 49.62 | 43.05 |
| CDY01389 | Canola | cytosol | 52.67 | 42.86 |
| CDX80590 | Canola | cytosol | 50.38 | 40.99 |
| CDY17409 | Canola | cytosol | 49.62 | 40.88 |
| CDY04140 | Canola | cytosol | 49.62 | 40.88 |
| CDY43408 | Canola | cytosol | 45.04 | 38.82 |
| CDY14922 | Canola | cytosol | 49.62 | 38.69 |
| CDY68971 | Canola | cytosol | 44.27 | 38.16 |
| CDX96963 | Canola | cytosol | 48.85 | 33.86 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078JU27 | UniProt:A0A078JU27 | EnsemblPlants:CDY69121 | ProteinID:CDY69121 |
| ProteinID:CDY69121.1 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00083450001 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF88 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | UniPathway:UPA00143 | UniParc:UPI0004EDED2C | SEG:seg | : |
Description
BnaCnng61970DBnaCnng61970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JU27]
Coordinates
chrLK038692:-:1411..1890
Molecular Weight (calculated)
14466.9 Da
IEP (calculated)
3.844
GRAVY (calculated)
-0.168
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKIMLKSS DGESFEVEEE VARQSQTLAN LIEDNCTDGE IPIANVTSKI LGMVVEYCKK HVVVVDGGDD SSSSSTSEED LKKWDADFMQ IDQSTMYDLI
101: LAANYLNVAS LLDLACQTVA DMIAENQWAF E
101: LAANYLNVAS LLDLACQTVA DMIAENQWAF E
001: MSTKKIMLKS SDGKMFEIEE ETARQCQTIA HMIEAECTDN VIPVSNVTSE ILEMVIEYCN KHHVDAANPC SDEDLKKWDK EFMEKDQYTI FHLMNAAYDL
101: HIKSLLALAY QTVADMVNDN KWAFE
101: HIKSLLALAY QTVADMVNDN KWAFE
Arabidopsis Description
ASK7SK7 [Source:UniProtKB/TrEMBL;Acc:A0A178VAP4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.