CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDX89042
CDX96963
CDY13521
CDY14922
CDY39073
CDY69121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27340.1	CDX68112	AT1G75950.1	12795696
AT1G27340.1	CDX73212	AT1G75950.1	12795696
AT1G27340.1	CDX80590	AT1G75950.1	12795696
AT1G27340.1	CDX85931	AT1G75950.1	12795696
AT1G27340.1	CDX87650	AT1G75950.1	12795696
AT1G27340.1	CDY13521	AT1G75950.1	12795696
AT1G27340.1	CDY39073	AT1G75950.1	12795696
AT1G27340.1	CDX96963	AT2G03160.1	12795696
AT1G27340.1	CDY14922	AT2G03160.1	12795696
AT1G27340.1	CDX89042	AT3G21850.1	12795696
AT1G27340.1	CDY69121	AT3G21850.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15715	Canola	nucleus, plastid	93.7	92.89
CDX84930	Canola	cytosol, plastid	85.87	84.58
AT1G27340.1	Thale cress	cytosol	85.22	83.94
CDY27608	Canola	nucleus	84.78	83.87
Solyc05g015520.2.1	Tomato	cytosol	64.57	63.73
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	64.35	63.52
VIT_01s0010g03730.t01	Wine grape	cytosol	62.39	63.08
KRH31515	Soybean	cytosol	60.43	61.78
GSMUA_AchrUn_...	Banana	cytosol	51.52	61.56
KRG97395	Soybean	cytosol	61.74	61.47
KRH42677	Soybean	cytosol, nucleus, plasma membrane	57.39	58.28
KRH58777	Soybean	cytosol	56.96	57.71
EES04122	Sorghum	cytosol	54.35	56.56
Zm00001d011994_P001	Maize	cytosol	53.91	55.98
Os01t0923900-01	Rice	cytosol	53.26	55.3
TraesCS3D01G428200.2	Wheat	cytosol	52.83	54.36
TraesCS3B01G470300.2	Wheat	cytosol	52.83	54.36
TraesCS3A01G435400.2	Wheat	cytosol	52.61	54.14
Zm00001d042309_P001	Maize	cytosol	53.26	51.91
CDY52009	Canola	nucleus	21.3	24.08
CDY53910	Canola	cytosol	21.09	23.77
CDX72391	Canola	cytosol	20.22	23.54
CDX70633	Canola	cytosol, plastid	22.17	23.5
CDX89124	Canola	cytosol	20.87	23.47
CDX78648	Canola	cytosol, plastid	22.17	23.45
CDX68951	Canola	cytosol	20.87	23.36
CDX75335	Canola	nucleus	20.65	23.28
CDY71979	Canola	cytosol	19.78	23.1
CDY43939	Canola	cytosol	20.87	23.02
CDX71729	Canola	mitochondrion	21.3	22.07
CDY11364	Canola	cytosol, golgi, nucleus	21.09	21.32
CDY52183	Canola	plastid	20.43	21.08
CDY12448	Canola	plastid	20.43	21.08
CDY32964	Canola	plastid	17.17	19.85
CDY43599	Canola	plastid	17.17	19.6

Protein Annotations

EnsemblPlants:CDY03911	EnsemblPlantsGene:GSBRNA2T00117403001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	ncoils:Coil	PANTHER:PTHR44829
PFAM:PF00646	PFscan:PS50181	ProteinID:CDY03911	ProteinID:CDY03911.1	SEG:seg	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0004EEED54	MapMan:35.1	:	:

Description

BnaC07g11360D

Coordinates

chrLK031947:+:764811..766823

Molecular Weight (calculated)

52109.2 Da

IEP (calculated)

8.910

GRAVY (calculated)

-0.217

Length

460 amino acids

Sequence
(BLAST)

001: MEEELAMLRQ LIGQLQELLQ NSSPPPPSPP SSSSSSPSFV VLHNPQHQNR CCLPLFDDTS SDVSCDTLMA AGKRPRYLKM LDTAKRSRKQ KNQVKSRTEA
101: DDGIMDQELW QEFPQDLFES VLSRLPIATL FQFRAVCHKW NALIDSDSFS KYCTDLPQTI PWFYTITHEN VNSGQVYDPC SKKWRHPVIP ALPKKTIVLP
201: MASAGGLVCF LDIGHRNFYV SNPLTKSFRE LPARSFKVWS RVVVGMTLNG NSTSDGYKVL WVGCEGAYEV YDSLRNVWTK RGIIPSNIKL PVLLNFKSQP
301: VAINSTFYFM LTDPEGILSY DMVSGRWKQY IIPCPPHLSD HTLAECGERL MLVGLVSKNA ATCVCVWELQ KMTLLWKEVD RMPNVWCLEF YGKHVRMNCL
401: GNKGCLILLS LRSRQMNRLI TYNAVTGEWA KVPGCTVPRG RKRLWIACGT AFQPSPTARA

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.