CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43190.1	CDY03088	AT2G01950.1	19000166
AT5G43190.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027473.1-P	Field mustard	plastid	88.94	99.16
CDY43599	Canola	plastid	98.74	97.52
AT5G43190.1	Thale cress	mitochondrion	87.69	86.6
PGSC0003DMT400027543	Potato	cytosol	47.24	49.34
KRH61403	Soybean	plastid	44.47	49.3
KRH15449	Soybean	cytosol, mitochondrion, nucleus	46.48	47.68
KRH52086	Soybean	plastid	40.45	46.26
VIT_18s0001g09110.t01	Wine grape	plasma membrane	48.99	37.43
CDY52009	Canola	nucleus	23.37	22.85
CDX89124	Canola	cytosol	23.12	22.49
CDY53910	Canola	cytosol	22.61	22.06
CDY43939	Canola	cytosol	22.61	21.58
CDX70633	Canola	cytosol, plastid	22.36	20.51
CDX78648	Canola	cytosol, plastid	22.36	20.46
CDX71729	Canola	mitochondrion	22.11	19.82
CDY11364	Canola	cytosol, golgi, nucleus	22.36	19.56
CDY12448	Canola	plastid	21.11	18.83
CDY52183	Canola	plastid	21.11	18.83
CDX72391	Canola	cytosol	18.09	18.23
CDX68951	Canola	cytosol	18.34	17.76
CDY15715	Canola	nucleus, plastid	20.6	17.67
CDX75335	Canola	nucleus	18.09	17.65
CDY71979	Canola	cytosol	17.34	17.51
CDY27608	Canola	nucleus	20.35	17.42
CDY03911	Canola	nucleus, plastid	19.85	17.17
CDX84930	Canola	cytosol, plastid	19.85	16.92

Protein Annotations

EnsemblPlants:CDY32964	EnsemblPlantsGene:GSBRNA2T00053177001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR44829	PFAM:PF00646
PFscan:PS50181	ProteinID:CDY32964	ProteinID:CDY32964.1	SEG:seg	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	UniParc:UPI0004EF0D92	UniProt:A0A078H637	MapMan:35.1	:	:

Description

BnaA09g16290DBnaA09g16290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H637]

Coordinates

chrLK032303:+:377575..378771

Molecular Weight (calculated)

44995.9 Da

IEP (calculated)

8.296

GRAVY (calculated)

0.073

Length

398 amino acids

Sequence
(BLAST)

001: MFRLRAPGKK PITITTTSTS ASNFLYWSPE SSPTAVSSPT AMDPVIWSNL PNHILDHILS FLPFKTLVSL RSTSKHLRSL ILSPTFLSDH SFSLPSFLLL
101: SHPQAFQSFP LFDPNLISWR TLPLPRSLSL TCASSLLSSS HGLLCFSVSP SSASSLSVFN PLTRSSRSIK FPFYPFPFEL LSLVAFPDSY RIFTISSSAS
201: RSVCLYDSGD RSWRIFGGVD QVLPRGFNQD GVFYNGSLYF VRSEPFLLVS INLDDGKWTT AAGDGVFPAE DEITFARLVT DPEKKILYMV GGIGSNGICR
301: SIKIYEFKRE TESWIEAETL PDIVCRKFTS VCYHNYEHVY CLWHKEMICV CCYNWPEILF FHVGRRTWHW VPKCPSLPEK WSCGFRWFSL VPSLSASV

Best Arabidopsis Sequence Match ( AT5G43190.1 )
(BLAST)

001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV

Arabidopsis Description

F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.