CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43190.1	KRH42483	AT2G01950.1	19000166
AT5G43190.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61403	Soybean	plastid	86.21	83.57
KRH15449	Soybean	cytosol, mitochondrion, nucleus	62.93	56.44
PGSC0003DMT400027543	Potato	cytosol	54.6	49.87
Bra027473.1-P	Field mustard	plastid	45.98	44.82
AT5G43190.1	Thale cress	mitochondrion	47.13	40.69
CDY32964	Canola	plastid	46.26	40.45
CDY43599	Canola	plastid	46.26	39.95
VIT_18s0001g09110.t01	Wine grape	plasma membrane	54.02	36.08
KRH45144	Soybean	cytosol, plastid	25.57	20.32
KRH31515	Soybean	cytosol	25.0	19.33
KRH01425	Soybean	cytosol	25.0	19.25
KRH42677	Soybean	cytosol, nucleus, plasma membrane	25.0	19.21
KRH05328	Soybean	cytosol	21.84	18.67
KRH58777	Soybean	cytosol	24.14	18.5
KRG97395	Soybean	cytosol	24.43	18.4
KRH58532	Soybean	plastid	22.7	18.37
KRH15707	Soybean	cytosol	21.26	18.18
KRH42420	Soybean	plastid	22.99	18.18
KRH68853	Soybean	cytosol	20.69	17.87
KRH61620	Soybean	cytosol	20.98	17.68
KRG97101	Soybean	cytosol	20.4	17.53
KRH52288	Soybean	cytosol	20.69	17.43
KRH47995	Soybean	cytosol	12.64	16.36

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02003404	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_06G045700
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller	UniProt:I1K858	InterPro:IPR001810	InterPro:IPR032675
EnsemblPlants:KRH52086	ProteinID:KRH52086	ProteinID:KRH52086.1	InterPro:LRR_dom_sf	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR44829	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI00023C3385	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:3474823..3475914

Molecular Weight (calculated)

39635.1 Da

IEP (calculated)

8.792

GRAVY (calculated)

0.215

Length

348 amino acids

Sequence
(BLAST)

001: MDPRIWSKLP PDVVEHILLL LPLKTLLNLR PTCKAFTCLL FSPSFVSKHS SSLSSSSLSP FSSFLLLSHP QFPHYFRLYD SNLCSWRTLS LSLSNSLPFS
101: SSFTLVSSSG GLFCLFNPTS STFLVYNLFV KSFRKIESPT SLSLYLGHVT FVTTPLGYYI VLLRSKSTSN TSVFVYDSNE LSCRSFEGFN AVLSGSIHQQ
201: GTFFDGGLYF TTPEPFSVVP IDLDSGRWER HVAELPQQVT FMRLVSDGEG KLYLLSGIGN DGILRSIKLW ELTKGERVWV EVVVLPEIRC RKFVWGMIFV
301: CCYMWPEILY YSVLKRTWDW LPRCPYLPLK SSCGFKWFSF VPKLYASV

Best Arabidopsis Sequence Match ( AT5G43190.1 )
(BLAST)

001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV

Arabidopsis Description

F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.