CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43190.1	KRH42483	AT2G01950.1	19000166
AT5G43190.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52086	Soybean	plastid	83.57	86.21
KRH15449	Soybean	cytosol, mitochondrion, nucleus	66.85	61.86
PGSC0003DMT400027543	Potato	cytosol	55.43	52.23
Bra027473.1-P	Field mustard	plastid	49.3	49.58
AT5G43190.1	Thale cress	mitochondrion	50.97	45.41
CDY32964	Canola	plastid	49.3	44.47
CDY43599	Canola	plastid	49.58	44.17
VIT_18s0001g09110.t01	Wine grape	plasma membrane	57.38	39.54
KRH45144	Soybean	cytosol, plastid	24.79	20.32
KRH42677	Soybean	cytosol, nucleus, plasma membrane	25.35	20.09
KRH31515	Soybean	cytosol	25.07	20.0
KRH58777	Soybean	cytosol	24.51	19.38
KRH05328	Soybean	cytosol	21.73	19.16
KRG97395	Soybean	cytosol	24.51	19.05
KRH01425	Soybean	cytosol	23.96	19.03
KRH15707	Soybean	cytosol	21.45	18.92
KRH58532	Soybean	plastid	22.28	18.6
KRH42420	Soybean	plastid	22.56	18.41
KRH68853	Soybean	cytosol	20.06	17.87
KRH61620	Soybean	cytosol	20.33	17.68
KRG97101	Soybean	cytosol	19.78	17.53
KRH52288	Soybean	cytosol	19.78	17.19
KRH47995	Soybean	cytosol	12.53	16.73

Protein Annotations

EntrezGene:100778667	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02002162	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_04G045200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	UniProt:I1JTQ5	InterPro:IPR001810	InterPro:IPR015915
InterPro:IPR032675	EnsemblPlants:KRH61403	ProteinID:KRH61403	ProteinID:KRH61403.1	InterPro:Kelch-typ_b-propeller	InterPro:LRR_dom_sf
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44829	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI00023C1680	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3610119..3611589

Molecular Weight (calculated)

41394.9 Da

IEP (calculated)

8.119

GRAVY (calculated)

0.133

Length

359 amino acids

Sequence
(BLAST)

001: MDPRIWSKLP PDVVEHILLL LPLKTLLNLR PTCKAFTSLL FSPSFVSKHS SSSSSPFSSY LLISHPQCPH YFRLYDSNLC SWRTLSLSLS NSLHLSASFT
101: LVSSSGGLFC LYNPTSSSFL VHNLFVRSSR KIESPITRSR HLGHVTFVTT PLGYYIVLLC SKSTSNTSVF VYDSSKLSWR CFEGFNVVFS DSFHQQGTFF
201: DGGLYFTTPE PFSVVFFDLE SGEWERYVAE LPQQVTFVRL VSDEEGKLYL LGGVGNDGIS RSIKLWELIK GERVWVEVVG LPEIMCRKFV SVCYHNYEHV
301: YCFWHEGMIC VCFYMWPEIL YYSVLRRTWD WLPRCPYLPL KFSCGFKWFS FVPKLYASV

Best Arabidopsis Sequence Match ( AT5G43190.1 )
(BLAST)

001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV

Arabidopsis Description

F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.