CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43190.1	KRH42483	AT2G01950.1	19000166
AT5G43190.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61403	Soybean	plastid	61.86	66.85
KRH52086	Soybean	plastid	56.44	62.93
PGSC0003DMT400027543	Potato	cytosol	55.15	56.17
Bra027473.1-P	Field mustard	plastid	47.42	51.54
AT5G43190.1	Thale cress	mitochondrion	48.97	47.15
CDY32964	Canola	plastid	47.68	46.48
CDY43599	Canola	plastid	47.68	45.91
VIT_18s0001g09110.t01	Wine grape	plasma membrane	57.22	42.61
KRH45144	Soybean	cytosol, plastid	23.45	20.78
KRH31515	Soybean	cytosol	23.45	20.22
KRH05328	Soybean	cytosol	21.13	20.15
KRH47995	Soybean	cytosol	13.92	20.07
KRH42677	Soybean	cytosol, nucleus, plasma membrane	22.94	19.65
KRH15707	Soybean	cytosol	20.36	19.41
KRH58777	Soybean	cytosol	22.68	19.38
KRH68853	Soybean	cytosol	20.1	19.35
KRG97395	Soybean	cytosol	22.94	19.26
KRH01425	Soybean	cytosol	22.42	19.25
KRH58532	Soybean	plastid	21.13	19.07
KRG97101	Soybean	cytosol	19.85	19.01
KRH52288	Soybean	cytosol	20.1	18.89
KRH61620	Soybean	cytosol	19.85	18.64
KRH42420	Soybean	plastid	21.13	18.64

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A0R0GK99	EMBL:ACUP02008598	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_14G088700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:IPR001810	InterPro:IPR015915
EnsemblPlants:KRH15449	ProteinID:KRH15449	ProteinID:KRH15449.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	PFAM:PF00646
PFAM:PF07646	PFscan:PS50181	PANTHER:PTHR44829	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI0006ED7058	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:7996348..7997968

Molecular Weight (calculated)

44589.8 Da

IEP (calculated)

8.519

GRAVY (calculated)

0.072

Length

388 amino acids

Sequence
(BLAST)

001: MMNKNTDIIM SYFRSKRQPH SILGTLYHPW DPIIWSKLPP EILEYILSFL PLKTFLNLRS TCKGFWSLIF SPPFISKHCS PTASSPFSSF LLLSHPQFHR
101: HFPLYDCTLG TWRNFSLSLS DSFHSFPSFS TLISSGGLFC LSDSTSCSLL VCNLLAKSSR KIQYPSFSLH LEHLTFVTTP TGYTIFVLFS EAASNCAFVY
201: DSKVQTWKRF RGFAPVLGDN HQQQGVLFNG GLYFATPEPF SVVMFDLKSG RWERPVWELP SHHLTFVRLV SDGGGKLYLV GGVGSNGISR SIKLWELGGD
301: GNYWVEVQSL PDLMCRKFVS VCYHNYEHVY CFWHEGMICI CCYTWPEILY YLLSRRTWHW LPRCPSLPLK CSCGFKWFSF VPNLYASV

Best Arabidopsis Sequence Match ( AT5G43190.1 )
(BLAST)

001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV

Arabidopsis Description

F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.