Factsheet for PGSC0003DMT400027543

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43190.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61403	Soybean	plastid	52.23	55.43
KRH15449	Soybean	cytosol, mitochondrion, nucleus	56.17	55.15
KRH52086	Soybean	plastid	49.87	54.6
Bra027473.1-P	Field mustard	plastid	49.08	52.38
AT5G43190.1	Thale cress	mitochondrion	50.92	48.14
CDY32964	Canola	plastid	49.34	47.24
CDY43599	Canola	plastid	49.61	46.9
VIT_18s0001g09110.t01	Wine grape	plasma membrane	59.58	43.57
PGSC0003DMT400019032	Potato	nucleus	23.36	21.29
PGSC0003DMT400003737	Potato	cytosol	22.83	19.86
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	23.36	19.1
PGSC0003DMT400045739	Potato	plastid	22.05	18.34
PGSC0003DMT400000251	Potato	cytosol	18.9	17.78

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102590134	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M1APT3
PFAM:PF00646	EnsemblPlantsGene:PGSC0003DMG400010617	PGSC:PGSC0003DMG400010617	EnsemblPlants:PGSC0003DMT400027543	PFscan:PS50181	PANTHER:PTHR44829
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00029646FF	RefSeq:XP_006356860.1	SEG:seg

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010617]

Coordinates

chr4:+:66964061..66965818

Molecular Weight (calculated)

44006.6 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.090

Length

381 amino acids

Sequence
(BLAST)

001: MNYNRYSLTM ENKKMIQSNQ MDPKIWSRLP EDVLEHLLSF LPLKTFLKLR STCKHFKTLL FSPPFISKSS SSSSSSSSSP FSSFFLLSHP QFPRQYPLFD
101: TVHNNWRNLS LCISPVLPSS SSVLLSSSNG LLCFNSSNSS SFIITNVLAR SSRVVKYPNL PFSFESVTLI SSSNNGYKLF VMSAFGSSSQ VFVYDSLVHS
201: WSQFGGFDLI LNENHHQEGV FHDGYLWFIT PEPYFTVCMD LDNGVWKRSN FELPSEVTFA RLVCDGDKKM FLVSGNGSNG ISRSMKLWEL NGDSKIWVEV
301: ENVPELICRK FLSVCYHNYE HVYCFWHKGL ICVCCYSWPE ILYYKVSRRT WHWLPKCPSL PDKWSCGFRW FSFVPELYAF V

Best Arabidopsis Sequence Match ( AT5G43190.1 )
(BLAST)

001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV

Arabidopsis Description

F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.