Factsheet for PGSC0003DMT400084722

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015520.2.1	Tomato	cytosol	96.35	96.35
VIT_01s0010g03730.t01	Wine grape	cytosol	74.46	76.26
KRH31515	Soybean	cytosol	72.1	74.67
KRG97395	Soybean	cytosol	73.18	73.81
GSMUA_AchrUn_...	Banana	cytosol	57.3	69.35
KRH42677	Soybean	cytosol, nucleus, plasma membrane	65.67	67.55
KRH58777	Soybean	cytosol	65.45	67.18
AT1G27340.1	Thale cress	cytosol	66.74	66.6
CDX84930	Canola	cytosol, plastid	65.24	65.1
CDY27608	Canola	nucleus	64.81	64.95
Bra032820.1-P	Field mustard	nucleus	64.81	64.95
CDY03911	Canola	nucleus, plastid	63.52	64.35
Bra030038.1-P	Field mustard	nucleus, plastid	63.73	64.29
CDY15715	Canola	nucleus, plastid	63.52	63.79
Zm00001d011994_P001	Maize	cytosol	59.44	62.53
EES04122	Sorghum	cytosol	59.01	62.22
Os01t0923900-01	Rice	cytosol	59.01	62.08
TraesCS3D01G428200.2	Wheat	cytosol	58.15	60.63
TraesCS3A01G435400.2	Wheat	cytosol	57.94	60.4
TraesCS3B01G470300.2	Wheat	cytosol	57.73	60.18
Zm00001d042309_P001	Maize	cytosol	57.08	56.36
PGSC0003DMT400003737	Potato	cytosol	23.18	24.66
PGSC0003DMT400000251	Potato	cytosol	20.6	23.7
PGSC0003DMT400027543	Potato	cytosol	19.1	23.36
PGSC0003DMT400019032	Potato	nucleus	20.39	22.73
PGSC0003DMT400045739	Potato	plastid	19.74	20.09

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102588258	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0009653	GO:GO:0009719	GO:GO:0009987	GO:GO:0010305	GO:GO:0010928
GO:GO:0060776	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M1D7W8
PFAM:PF00646	EnsemblPlantsGene:PGSC0003DMG400034305	PGSC:PGSC0003DMG400034305	EnsemblPlants:PGSC0003DMT400084722	PFscan:PS50181	PANTHER:PTHR44829
SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI000296687F	RefSeq:XP_006352179.1	SEG:seg

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400034305]

Coordinates

chr5:+:14146752..14152580

Molecular Weight (calculated)

52438.2 Da

IEP (calculated)

9.313

GRAVY (calculated)

-0.075

Length

466 amino acids

Sequence
(BLAST)

001: MEVLAMLRQL IGQVKQLLEL QASSSSSSSL VAVAPNISFH LQTPPLIHLP RCYFLNLDDN SAEDSCYNII MTAGKSENLK MLEPGKPPPK KKGRKERNQG
101: KVTGTSCSIE NLDQQIWKEF PEDLFEAVVA RLPVATFFRF RLVCRKWNSM LMSQSFSEQC AQVPQPQPWF YTITHENVNT GAMYDPTLKK WHHPTIPALP
201: TKLIVLPVAS AGGLVCFLDI GHRSFYVCNP LTRSFKELPA RSVKVWSRVA VGMTLCGKSA GGGYNILWVG CDGEFEVYDS RNNSWARPGT MSSNIKLPLA
301: LNFKSQTVSI GSKLYFMRSD PDGIVSYDMV TGVWKQFIIP APLHLSDHTL AECGGRIMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HVRMTCLGNK GLLMLSLRSR QMNRLVTYDF SSREWMKVPG CVLPRGRKRQ WIACGTAFHP CLTALA

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.