Factsheet for Zm00001d042309_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04122	Sorghum	cytosol	85.59	91.4
Zm00001d011994_P001	Maize	cytosol	85.38	90.97
Os01t0923900-01	Rice	cytosol	78.6	83.75
TraesCS3D01G428200.2	Wheat	cytosol	76.27	80.54
TraesCS3B01G470300.2	Wheat	cytosol	75.85	80.09
TraesCS3A01G435400.2	Wheat	cytosol	75.85	80.09
GSMUA_AchrUn_...	Banana	cytosol	51.69	63.38
VIT_01s0010g03730.t01	Wine grape	cytosol	57.63	59.78
KRH31515	Soybean	cytosol	56.57	59.33
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	56.36	57.08
KRG97395	Soybean	cytosol	55.72	56.93
Solyc05g015520.2.1	Tomato	cytosol	55.51	56.22
AT1G27340.1	Thale cress	cytosol	54.45	55.03
CDX84930	Canola	cytosol, plastid	53.39	53.96
CDY27608	Canola	nucleus	52.97	53.76
Bra032820.1-P	Field mustard	nucleus	52.97	53.76
CDY03911	Canola	nucleus, plastid	51.91	53.26
Bra030038.1-P	Field mustard	nucleus, plastid	51.69	52.81
KRH42677	Soybean	cytosol, nucleus, plasma membrane	50.64	52.76
KRH58777	Soybean	cytosol	50.42	52.42
CDY15715	Canola	nucleus, plastid	51.48	52.37
Zm00001d043989_P001	Maize	cytosol	18.86	22.14
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	19.49	21.9
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	19.49	21.9
Zm00001d053358_P001	Maize	cytosol	18.22	21.23
Zm00001d016066_P001	Maize	cytosol	18.43	20.96
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	17.8	20.24
Zm00001d006874_P001	Maize	cytosol	16.95	19.75
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	16.74	19.7
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	16.95	18.48
Zm00001d036653_P001	Maize	plastid	16.53	17.89

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A1D6N2R0	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	ProteinID:ONM34999.1	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44829	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0008453C5D	EnsemblPlantsGene:Zm00001d042309	EnsemblPlants:Zm00001d042309_P001	EnsemblPlants:Zm00001d042309_T001
SEG:seg	:	:	:	:	:

Description

F-box only protein 6

Coordinates

chr3:+:160269957..160273101

Molecular Weight (calculated)

53575.9 Da

IEP (calculated)

8.336

GRAVY (calculated)

-0.179

Length

472 amino acids

Sequence
(BLAST)

001: MGEVAALRQL VGQVQELWDL YGANGNPVPR QGERANENLL ASSSSSSSSS LSLSLPVVWW YLPDFEHGSI KDDYCGGSSG YNSELLKIME TNQSPPCKRP
101: RRDRNREKAP SSNKIEVMEQ EIWRDFPEDL FETVIARLPV AAIFRFRTVC RRWSSLLGSD SFSRQYSEAP HGLPWFYTIT HENSNNNVAM YDPLLKKWHH
201: QSVPLNHTKI VIPVASVGGL VCLLDLSHRN FYICNPLTQS LKEIPPRSVH GWSRVVVGMV LNGRSSSDGY KVMWLDIDGT CEVYDSTKNV WSCPGTFPPS
301: IKLPLALNLR SQPVAVGSMI YFMCAEPDGV LSYDVSTGIW RQFAIPLPLH LTDHTLAEFQ GRVMLVGLLC KNAATCICIW ELQKMTLLWK EVDRMPNLWC
401: LEFYGKHMKM KCLGNSGLLM LSLKAKHMNR LVTYNLLKRE WQKVPDCMLP WSRKRQWITC GTAFDPVPCA LV

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.