Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84930 | Canola | cytosol, plastid | 88.87 | 88.87 |
| Bra032820.1-P | Field mustard | nucleus | 87.79 | 88.17 |
| CDY27608 | Canola | nucleus | 87.79 | 88.17 |
| CDY03911 | Canola | nucleus, plastid | 83.94 | 85.22 |
| Bra030038.1-P | Field mustard | nucleus, plastid | 83.08 | 83.98 |
| CDY15715 | Canola | nucleus, plastid | 83.08 | 83.62 |
| PGSC0003DMT400084722 | Potato | cytosol, mitochondrion | 66.6 | 66.74 |
| VIT_01s0010g03730.t01 | Wine grape | cytosol | 64.45 | 66.15 |
| Solyc05g015520.2.1 | Tomato | cytosol | 65.95 | 66.09 |
| KRH31515 | Soybean | cytosol | 63.17 | 65.56 |
| KRG97395 | Soybean | cytosol | 64.03 | 64.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.46 | 63.64 |
| KRH42677 | Soybean | cytosol, nucleus, plasma membrane | 58.03 | 59.82 |
| EES04122 | Sorghum | cytosol | 56.53 | 59.73 |
| Zm00001d011994_P001 | Maize | cytosol | 56.32 | 59.37 |
| KRH58777 | Soybean | cytosol | 57.6 | 59.25 |
| Os01t0923900-01 | Rice | cytosol | 55.25 | 58.24 |
| TraesCS3B01G470300.2 | Wheat | cytosol | 55.03 | 57.49 |
| TraesCS3D01G428200.2 | Wheat | cytosol | 55.03 | 57.49 |
| TraesCS3A01G435400.2 | Wheat | cytosol | 55.03 | 57.49 |
| Zm00001d042309_P001 | Maize | cytosol | 55.03 | 54.45 |
| AT5G43190.1 | Thale cress | mitochondrion | 19.91 | 23.08 |
| AT5G15710.2 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole | 22.06 | 22.99 |
| AT3G61590.4 | Thale cress | plasma membrane | 20.77 | 21.7 |
| AT1G30950.1 | Thale cress | plastid | 19.91 | 21.04 |
| AT4G33160.2 | Thale cress | cytosol | 20.34 | 18.34 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:839623 | UniProt:A0A178WH33 | ProteinID:AAF99732.1 |
| ProteinID:AEE30808.1 | ArrayExpress:AT1G27340 | EnsemblPlantsGene:AT1G27340 | RefSeq:AT1G27340 | TAIR:AT1G27340 | RefSeq:AT1G27340-TAIR-G |
| EnsemblPlants:AT1G27340.1 | TAIR:AT1G27340.1 | EMBL:AY085471 | Unigene:At.20471 | EMBL:BT025325 | ncoils:Coil |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010305 |
| GO:GO:0010928 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031146 | GO:GO:0060776 |
| InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | RefSeq:NP_564278.1 | ProteinID:OAP16855.1 |
| PFAM:PF00646 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50181 | PANTHER:PTHR44829 |
| UniProt:Q9FZK1 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | UniParc:UPI00000A472D | SEG:seg |
Description
FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
Coordinates
chr1:+:9495344..9498085
Molecular Weight (calculated)
52825.1 Da
IEP (calculated)
8.481
GRAVY (calculated)
-0.181
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.