Factsheet for Solyc05g015520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
plasma membrane 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	96.35	96.35
VIT_01s0010g03730.t01	Wine grape	cytosol	73.61	75.38
KRH31515	Soybean	cytosol	71.03	73.56
KRG97395	Soybean	cytosol	72.53	73.16
GSMUA_AchrUn_...	Banana	cytosol	57.08	69.09
KRH42677	Soybean	cytosol, nucleus, plasma membrane	64.38	66.23
AT1G27340.1	Thale cress	cytosol	66.09	65.95
KRH58777	Soybean	cytosol	64.16	65.86
CDX84930	Canola	cytosol, plastid	65.24	65.1
Bra032820.1-P	Field mustard	nucleus	64.81	64.95
CDY27608	Canola	nucleus	64.81	64.95
CDY03911	Canola	nucleus, plastid	63.73	64.57
Bra030038.1-P	Field mustard	nucleus, plastid	63.95	64.5
CDY15715	Canola	nucleus, plastid	63.73	64.01
Zm00001d011994_P001	Maize	cytosol	58.58	61.63
Os01t0923900-01	Rice	cytosol	58.37	61.4
EES04122	Sorghum	cytosol	58.15	61.31
TraesCS3D01G428200.2	Wheat	cytosol	57.73	60.18
TraesCS3A01G435400.2	Wheat	cytosol	57.51	59.96
TraesCS3B01G470300.2	Wheat	cytosol	57.3	59.73
Zm00001d042309_P001	Maize	cytosol	56.22	55.51
Solyc01g095370.2.1	Tomato	cytosol	21.03	24.26
Solyc02g089310.1.1	Tomato	cytosol, plastid	22.75	24.2
Solyc08g067300.1.1	Tomato	nucleus	20.82	23.43
Solyc02g081670.1.1	Tomato	plastid	19.96	20.44

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653
GO:GO:0009719	GO:GO:0009987	GO:GO:0010305	GO:GO:0010928	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031146	GO:GO:0060776	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915
UniProt:K4BYR8	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44829	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc05g015520.2	EnsemblPlants:Solyc05g015520.2.1	UniParc:UPI0002766A90	SEG:seg

Description

No Description!

Coordinates

chr5:+:10825643..10831265

Molecular Weight (calculated)

52532.2 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.098

Length

466 amino acids

Sequence
(BLAST)

001: MEVLAMLRQL IGQVKQLLEL QSSSPSSSSL LAVPPNISFH LQTPPLVHLP RCYFLNLDEN SAEDSCYNII MTAGKSENLK MLEPGKPPPK KKARKERNQG
101: KVTGTSCSIE NLDQQIWKEF PEDLFEAVVA RLPVATFFRF RLVCRKWNSM LTSQSFSEEC AQVRQPQPWF YTITHENVNT GAMYDPTLKK WHHPTIPALP
201: TKLIVLPVAS AGGLVCFLDI GHRSFYVCNP LTRSFKELPA RSVKVWSRVA VGMTLCGKSA GEGYNILWVG CDGEFEVYDS RNNSWARPGT MTSNIKLPLA
301: LNFKSQTVSI GSKLYFMRSD PDGIVSYDVV SGVWKQFIIP APLHLSDHTL AECGGRIMLV GLLSKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HVRMTCLGNK GLLMLSLRSR QMNRLVTYDF SSREWMKVPG CVLPRGKKRQ WIACGTAFHP CLTAVA

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.