Factsheet for Solyc08g067300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019032	Potato	nucleus	92.51	91.63
VIT_04s0008g03190.t01	Wine grape	cytosol	54.83	55.77
KRH05328	Soybean	cytosol	50.24	51.11
KRH15707	Soybean	cytosol	50.24	51.11
GSMUA_Achr7P11470_001	Banana	nucleus	42.75	50.28
KRH61620	Soybean	cytosol	49.52	49.64
KRH52288	Soybean	cytosol	49.03	49.15
Bra011423.1-P	Field mustard	nucleus	45.65	46.32
GSMUA_Achr10P...	Banana	cytosol	45.89	46.23
CDY71979	Canola	cytosol	43.72	45.94
CDX75335	Canola	nucleus	45.17	45.83
CDX72391	Canola	cytosol	43.48	45.57
CDX68951	Canola	cytosol	45.17	45.5
Bra037018.1-P	Field mustard	cytosol	43.0	45.29
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	39.61	40.9
Zm00001d006874_P001	Maize	cytosol	39.86	40.74
Os03t0399400-01	Rice	mitochondrion	39.86	40.44
TraesCS2A01G167400.1	Wheat	cytosol	40.1	39.81
Os07t0617700-01	Rice	cytosol	38.65	39.41
TraesCS2D01G175100.1	Wheat	cytosol	39.61	39.33
OQU90263	Sorghum	cytosol, mitochondrion, plastid	39.13	39.32
TraesCS5B01G100300.1	Wheat	cytosol, plastid	37.44	38.56
TraesCS2B01G193700.1	Wheat	cytosol	38.65	38.55
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	38.41	38.31
KXG39191	Sorghum	nucleus	38.41	37.86
AT4G33160.2	Thale cress	cytosol	46.38	37.07
TraesCS5D01G106500.1	Wheat	cytosol	38.89	35.78
TraesCS5A01G094200.1	Wheat	cytosol	37.44	34.29
HORVU5Hr1G025530.5	Barley	cytosol	30.19	30.79
HORVU2Hr1G030810.1	Barley	plastid	39.13	29.67
Solyc05g015520.2.1	Tomato	cytosol	23.43	20.82
Solyc01g095370.2.1	Tomato	cytosol	19.57	20.05
Solyc02g089310.1.1	Tomato	cytosol, plastid	20.05	18.95
Solyc02g081670.1.1	Tomato	plastid	18.12	16.48

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR032675	UniProt:K4CLV6	InterPro:LRR_dom_sf	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR45094	PANTHER:PTHR45094:SF2	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
EnsemblPlantsGene:Solyc08g067300.1	EnsemblPlants:Solyc08g067300.1.1	UniParc:UPI000276C278	SEG:seg	:	:

Description

F-box only protein 13 [Source:Projected from Arabidopsis thaliana (AT4G33160) UniProtKB/Swiss-Prot;Acc:Q9SMZ3]

Coordinates

chr8:-:56373419..56374663

Molecular Weight (calculated)

47043.6 Da

IEP (calculated)

5.171

GRAVY (calculated)

-0.248

Length

414 amino acids

Sequence
(BLAST)

001: MASKRNLKRK LLDQHLVFPL DELNQDLLER VLSWLPTSTF LRLTSVSKRW KSAANSPVFH HACSQIPSRE PWFYMVDSSQ SSEIKNQQQF VYDAAEMNWK
101: FLTYPSNFIG EKKLNQSNFL PVAASGGLLC FHNGENGEFL ICNPVTSSYR KLPFLDYSDT LSAIGMISTQ ESYKLFLIFG EISSLSFRVY DSTADSWEDT
201: AILSKKSPTC PAAQFCTTDD DDDDRMLYFL SKCGNVVATE IQKNPCKQYS SITTTTKGDR QEILCFLNSS GKVVACNLTE KHFFEYPRLL PLHHEYSIDL
301: VECGGELLAV VLSEFLETAS LRIWKFDEKE WAWNQVLTMP SAISHEFYSK KVDINCTGSS EHMFVCISNS GSSDDESCRY FLCKLAENEW TELPACSGKF
401: SCAFSFQPRI EASV

Best Arabidopsis Sequence Match ( AT4G33160.2 )
(BLAST)

001: MFTGYSFGFG DSSEEEVAQH TIFPFLLVSL SPQEYLLCRG LSTLFDRGAQ EASLLSLSLS SMPSSATSTY LLSLKQVSLT ASSPLLLQLK DRFFHQPKLL
101: NMGFSTGKRK SRDEEEDRVS FFASEFPMDD LNDDVLERVL SWLPTSCFFR MSSVCKRWKS SQTSKSFKLA CSQIPTRDPW FFMIDNDSNS SSFVFDSTEN
201: SWKNLNRRDF LHHHRQDFIP VASSGGLLCY RCSISGDFLL RNPLTGSSRD IPSQDNNNNK PLQAVAMTTT TVTPSSYTLV TISGEIPNLS FKIYESNADS
301: WSKDQELESV KNNDSSLHDD YDTDSGTVYF LSKQGNVVVA SNNLQRSPSK QYSSVITVTD EAEIVYFLSS YGTIVACDLT KRCFTELPKL LPPFLEYSID
401: LVECEGTMYV ILLSEFFESA SLRIWRLDNN REWVQVGMLP PALSHELYGK KGDINCVGGA GNKILVCFNA SPPEVYCRYF VYDLVAEEWN ELPKCFKDGE
501: AVDFVSALSF QPRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.