Factsheet for GSMUA_Achr10P25720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11470_001	Banana	nucleus	70.8	82.67
KRH15707	Soybean	cytosol	54.5	55.04
KRH05328	Soybean	cytosol	53.77	54.3
VIT_04s0008g03190.t01	Wine grape	cytosol	53.04	53.56
KRH61620	Soybean	cytosol	53.77	53.51
KRH52288	Soybean	cytosol	53.77	53.51
Bra011423.1-P	Field mustard	nucleus	47.93	48.28
CDX75335	Canola	nucleus	46.96	47.3
CDY71979	Canola	cytosol	45.26	47.21
Bra037018.1-P	Field mustard	cytosol	44.77	46.82
CDX68951	Canola	cytosol	46.72	46.72
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	45.5	46.63
CDX72391	Canola	cytosol	44.53	46.33
Solyc08g067300.1.1	Tomato	nucleus	46.23	45.89
Os07t0617700-01	Rice	cytosol	45.26	45.81
PGSC0003DMT400019032	Potato	nucleus	46.23	45.45
KXG39191	Sorghum	nucleus	46.23	45.24
Os03t0399400-01	Rice	mitochondrion	44.28	44.61
TraesCS5B01G100300.1	Wheat	cytosol, plastid	43.31	44.28
OQU90263	Sorghum	cytosol, mitochondrion, plastid	44.04	43.93
TraesCS2D01G175100.1	Wheat	cytosol	44.53	43.88
TraesCS2A01G167400.1	Wheat	cytosol	43.8	43.17
TraesCS2B01G193700.1	Wheat	cytosol	43.55	43.13
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	42.82	42.41
Zm00001d006874_P001	Maize	cytosol	41.12	41.73
TraesCS5D01G106500.1	Wheat	cytosol	44.28	40.44
TraesCS5A01G094200.1	Wheat	cytosol	43.8	39.82
AT4G33160.2	Thale cress	cytosol	47.69	37.84
HORVU5Hr1G025530.5	Barley	cytosol	34.31	34.73
HORVU2Hr1G030810.1	Barley	plastid	43.31	32.6
GSMUA_AchrUn_...	Banana	cytosol	21.9	23.38
GSMUA_Achr9P05330_001	Banana	cytosol	20.19	20.65
GSMUA_Achr1P09520_001	Banana	cytosol	17.52	20.63
GSMUA_Achr3P23630_001	Banana	plastid	18.49	19.9
GSMUA_Achr7P10710_001	Banana	cytosol	17.27	18.93
GSMUA_Achr3P03450_001	Banana	cytosol	17.03	18.87
GSMUA_Achr6P14190_001	Banana	cytosol	17.03	18.42
GSMUA_Achr10P...	Banana	cytosol	16.55	17.89
GSMUA_Achr8P27920_001	Banana	golgi, mitochondrion, plasma membrane, plastid	16.55	12.64

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.130.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G25720_001	EnsemblPlants:GSMUA_Achr10P25720_001	EnsemblPlants:GSMUA_Achr10T25720_001	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	InterPro:IPR015943	UniProt:M0RLE6	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR45094
PANTHER:PTHR45094:SF2	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI00029660D0	InterPro:WD40/YVTN_repeat-like_dom_sf

Description

Putative F-box only protein 13 [Source:GMGC_GENE;Acc:GSMUA_Achr10G25720_001]

Coordinates

chr10:+:29604977..29607217

Molecular Weight (calculated)

46184.2 Da

IEP (calculated)

5.472

GRAVY (calculated)

-0.111

Length

411 amino acids

Sequence
(BLAST)

001: MEQHMDLLAR KSRKRKAEEE AHVIPTFFLD ELNQDLLERV LSWLPASTFF RLRSVCKRWR SVVTSETFRV ACSRIPFREP WFLMVDQDLD HSIAFDTSER
101: NWKSVGHQSC IPQSRSCKPV PVSASGGLVC YRTDSGKFIV SNLLTGSCRE IPPAGHGGES HALQAVAMCS TPIYPSSFKI ILVSGKSPNL AFRVFDSMKS
201: TWEDEVMLAQ KAGSSSDSHV SGDEIIYFLS KAGDVIATNM QRSPSKQYSS VLITEDGEQV VYFLSETGTI VACNLAQKAF FEYPRLLPIY LEYSIDVVEC
301: NGEMLVVVLS EFLESASLRV WKFCEESHSW QQVAAMPPSM SHEFYGQKMD INCTGCQDMI FICANSSECS RNIMLDMAAG EWVELPKFYV NGKAKEFTSA
401: ISFEPRVEAT V

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.