Skip to main content
crop-pal logo
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G193700.1 Wheat cytosol 71.79 94.46
TraesCS2D01G175100.1 Wheat cytosol 71.98 94.24
TraesCS2A01G167400.1 Wheat cytosol 71.98 94.24
Os07t0617700-01 Rice cytosol 53.66 72.17
OQU90263 Sorghum cytosol, mitochondrion, plastid 51.47 68.2
Zm00001d022151_P001 Maize cytosol, mitochondrion, plastid 50.18 66.02
Zm00001d006874_P001 Maize cytosol 48.9 65.93
HORVU5Hr1G025530.5 Barley cytosol 36.08 48.52
GSMUA_Achr7P11470_001 Banana nucleus 30.77 47.73
KRH05328 Soybean cytosol 34.07 45.7
KRH15707 Soybean cytosol 34.07 45.7
VIT_04s0008g03190.t01 Wine grape cytosol 32.97 44.23
GSMUA_Achr10P... Banana cytosol 32.6 43.31
KRH61620 Soybean cytosol 32.42 42.86
KRH52288 Soybean cytosol 32.23 42.62
CDY71979 Canola cytosol 29.49 40.86
CDX72391 Canola cytosol 29.3 40.51
Bra037018.1-P Field mustard cytosol 29.12 40.46
Solyc08g067300.1.1 Tomato nucleus 29.67 39.13
PGSC0003DMT400019032 Potato nucleus 29.67 38.76
CDX75335 Canola nucleus 28.57 38.24
Bra011423.1-P Field mustard nucleus 28.57 38.24
CDX68951 Canola cytosol 28.75 38.2
AT4G33160.2 Thale cress cytosol 30.77 32.43
HORVU7Hr1G108970.1 Barley cytosol, plasma membrane, plastid 14.65 18.26
HORVU3Hr1G059460.1 Barley cytosol 12.45 16.92
HORVU2Hr1G118340.2 Barley cytosol 9.71 14.13
Protein Annotations
EnsemblPlants:HORVU2Hr1G030810.1EnsemblPlantsGene:HORVU2Hr1G030810Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:Gal_Oxase/kelch_b-propellerInterPro:IPR001810PANTHER:PTHR45094PANTHER:PTHR45094:SF1
PFAM:PF00646PFscan:PS50181SEG:segSMART:SM00256SUPFAM:SSF50965SUPFAM:SSF81383
UniParc:UPI000B478754UniProt:A0A287HK80MapMan:35.1:::
Description
No Description!
Coordinates
chrchr2H:+:114309096..114311427
Molecular Weight (calculated)
58191.0 Da
IEP (calculated)
6.059
GRAVY (calculated)
-0.182
Length
546 amino acids
Sequence
(BLAST)
001: STGSARATLT PPPPRPRPRP HAHPASDLLL PSPLSSPHLT SPSFPKCIFL FRFACQREQK EPPLPPPPPP SPPHEPSSPP PPPPPLCAST HSGRRYKAGD
101: LTRTASASFL HPLPLCVFSS VRSKILDMAA ALAASGGKKR KCQELSAPEL GQLHEDMLER VLARLPPASF FRLRGVCRRW SEAAGSPAFL AACARVPSRD
201: PWFLMLSDQQ EDEQRPPCPA VAFDAAEKTW ARCRGAPGPV PVAAAGGLVL YRAPETGALT VANPLSGVSR ALPPPPPAAA PDALYAVAMY GSPYRVVLIL
301: GDLPHLSMTL FDSSKNAWED AVPLSRKTEA SPADVQAPHD DGDDDIDEDM DGDGDGAVYY LSKSGDVMVS STQRSASRQY SSAVTCRSDG GEAVAYFLSH
401: SGAVVACDLA RRVFSELPRI LPVHSEYSID VVACDGRAYV VVLSEYLDTA SLRVWEFSDG AWRQVAAMPP AMSHALYGKK ADVNCVGHGG RVMVCVSSGD
501: ADANGCFMCD VGSNAWEELP RCAGGDGEAM DFVAAFSFEP RMEVAV
Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)
001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV
Arabidopsis Description
F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.