Factsheet for TraesCS2B01G193700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G175100.1	Wheat	cytosol	95.9	95.44
TraesCS2A01G167400.1	Wheat	cytosol	95.18	94.72
HORVU2Hr1G030810.1	Barley	plastid	94.46	71.79
Os07t0617700-01	Rice	cytosol	70.12	71.67
OQU90263	Sorghum	cytosol, mitochondrion, plastid	66.75	67.23
Zm00001d006874_P001	Maize	cytosol	63.86	65.43
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	65.3	65.3
TraesCS5B01G100300.1	Wheat	cytosol, plastid	60.48	62.44
GSMUA_Achr7P11470_001	Banana	nucleus	40.24	47.44
KRH15707	Soybean	cytosol	43.86	44.72
KRH05328	Soybean	cytosol	43.61	44.47
VIT_04s0008g03190.t01	Wine grape	cytosol	42.89	43.73
GSMUA_Achr10P...	Banana	cytosol	43.13	43.55
KRH61620	Soybean	cytosol	42.41	42.62
KRH52288	Soybean	cytosol	42.17	42.37
CDY71979	Canola	cytosol	38.8	40.86
CDX72391	Canola	cytosol	38.8	40.76
Bra037018.1-P	Field mustard	cytosol	38.31	40.46
Solyc08g067300.1.1	Tomato	nucleus	38.55	38.65
CDX75335	Canola	nucleus	37.83	38.48
Bra011423.1-P	Field mustard	nucleus	37.83	38.48
CDX68951	Canola	cytosol	38.07	38.44
PGSC0003DMT400019032	Potato	nucleus	38.31	38.04
AT4G33160.2	Thale cress	cytosol	38.55	30.89
TraesCS3B01G470300.2	Wheat	cytosol	21.2	19.69
TraesCS3B01G267600.1	Wheat	cytosol	16.14	16.67
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	19.28	16.56

Protein Annotations

EnsemblPlants:TraesCS2B01G193700.1	EnsemblPlantsGene:TraesCS2B01G193700	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR45094	PANTHER:PTHR45094:SF1
PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:170396025..170397272

Molecular Weight (calculated)

44458.7 Da

IEP (calculated)

4.876

GRAVY (calculated)

-0.043

Length

415 amino acids

Sequence
(BLAST)

001: MAAAVAASVG RKRKCEELSA PELGQLHEDM LERVLARLPP SSFFRLRGVC RRWREAAGSP AFLAACARVP ARDPWFLMLS DQQEEQRPPC PAVAFDAAEK
101: TWARCRGAPG PVPVAAAGGL VLYRAPETGA LTVANPLSGV SRALPPPPPA ATVALYAVAM YGSPYRVVLI LGELPRLSMT VFDSSKNAWE NAVPLSRKTE
201: ASPADAQAPH DDDDIDEDMD GDGDGAVYYL SKSGDVMVSS TQRSASRQYS SAVTCRSDGG EAVAYFLSHS GAVVACDLAR RVFTELPRIL PMHFEYSIDV
301: VACDGRAYVV VLSEYLDTAT LRLWEFSDGA WRHVAAMSPA MSHAFYGKKA DVNCVGHGGR VMVCVSSGDA DANGCFMCDV GSNAWEELPR CAGGDGEAMD
401: FVAAFSFEPR MEVAV

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.