Factsheet for Bra037018.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71979	Canola	cytosol	98.22	97.97
Bra011423.1-P	Field mustard	nucleus	78.63	75.74
AT4G33160.2	Thale cress	cytosol	77.1	58.49
KRH15707	Soybean	cytosol	53.18	51.35
KRH05328	Soybean	cytosol	53.18	51.35
VIT_04s0008g03190.t01	Wine grape	cytosol	51.65	49.88
KRH61620	Soybean	cytosol	50.64	48.18
KRH52288	Soybean	cytosol	48.85	46.49
GSMUA_Achr7P11470_001	Banana	nucleus	40.2	44.89
GSMUA_Achr10P...	Banana	cytosol	46.82	44.77
PGSC0003DMT400019032	Potato	nucleus	46.56	43.78
Solyc08g067300.1.1	Tomato	nucleus	45.29	43.0
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	41.22	40.4
OQU90263	Sorghum	cytosol, mitochondrion, plastid	41.73	39.81
Os03t0399400-01	Rice	mitochondrion	40.71	39.22
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	41.22	39.04
Zm00001d006874_P001	Maize	cytosol	40.2	39.01
KXG39191	Sorghum	nucleus	41.48	38.81
Os07t0617700-01	Rice	cytosol	39.95	38.67
TraesCS2A01G167400.1	Wheat	cytosol	40.97	38.61
TraesCS2B01G193700.1	Wheat	cytosol	40.46	38.31
TraesCS2D01G175100.1	Wheat	cytosol	40.46	38.13
TraesCS5B01G100300.1	Wheat	cytosol, plastid	38.93	38.06
TraesCS5D01G106500.1	Wheat	cytosol	40.46	35.33
TraesCS5A01G094200.1	Wheat	cytosol	39.19	34.07
HORVU5Hr1G025530.5	Barley	cytosol	31.3	30.3
HORVU2Hr1G030810.1	Barley	plastid	40.46	29.12
Bra030038.1-P	Field mustard	nucleus, plastid	23.92	20.35
Bra007616.1-P	Field mustard	cytosol	20.36	19.8
Bra032820.1-P	Field mustard	nucleus	23.16	19.57
Bra006317.1-P	Field mustard	cytosol, plastid	20.87	18.85
Bra027473.1-P	Field mustard	plastid	17.05	18.77
Bra014429.1-P	Field mustard	cytosol	19.59	18.29
Bra003458.1-P	Field mustard	nucleus	18.83	18.14
Bra039878.1-P	Field mustard	plastid	19.34	17.08

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra037018	EnsemblPlants:Bra037018.1	EnsemblPlants:Bra037018.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M4F7F8	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR45094
PANTHER:PTHR45094:SF2	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0002541075	SEG:seg

Description

AT4G33160 (E=9e-155) | ubiquitin-protein ligase

Coordinates

chrA03:+:28903746..28909381

Molecular Weight (calculated)

44091.4 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.113

Length

393 amino acids

Sequence
(BLAST)

001: MGFSAGKRKS RDEAVTLSDL NDDVLERVLS HLPTSSYFRM TSVCKRWKST QTSTTFKLAC SRVPSRDPWF FMIAKDSTSS SSSFVYDSTE NSWKNLNRSL
101: LLRHRRDFTP VASSGGLLCF RSSVSGDFLL RNPLTGSSID LPWQDDNKPL QAVAMTTSYK LVTISGEVPN LCFRFYESSS CSWSKEFEIP LFSCSDGDDT
201: ETVYFLSKSG NVVVASNTLL RTPSKQYSSV ITVKDNVETV YFLTSHGTII ACDLAKRSFT HLPKLLPPFL EYSIDLVECN GTMFVVLLSE FYESASLRIW
301: KLEDMNWVHV GMLPPAMSHE LYGRKGDINC VGGAGGNKIL VCFNADLPEV CCRYFVYDLV GEEWSELPRC FKDGEAVEFV SALSFQPRIE ATV

Best Arabidopsis Sequence Match ( AT4G33160.2 )
(BLAST)

001: MFTGYSFGFG DSSEEEVAQH TIFPFLLVSL SPQEYLLCRG LSTLFDRGAQ EASLLSLSLS SMPSSATSTY LLSLKQVSLT ASSPLLLQLK DRFFHQPKLL
101: NMGFSTGKRK SRDEEEDRVS FFASEFPMDD LNDDVLERVL SWLPTSCFFR MSSVCKRWKS SQTSKSFKLA CSQIPTRDPW FFMIDNDSNS SSFVFDSTEN
201: SWKNLNRRDF LHHHRQDFIP VASSGGLLCY RCSISGDFLL RNPLTGSSRD IPSQDNNNNK PLQAVAMTTT TVTPSSYTLV TISGEIPNLS FKIYESNADS
301: WSKDQELESV KNNDSSLHDD YDTDSGTVYF LSKQGNVVVA SNNLQRSPSK QYSSVITVTD EAEIVYFLSS YGTIVACDLT KRCFTELPKL LPPFLEYSID
401: LVECEGTMYV ILLSEFFESA SLRIWRLDNN REWVQVGMLP PALSHELYGK KGDINCVGGA GNKILVCFNA SPPEVYCRYF VYDLVAEEWN ELPKCFKDGE
501: AVDFVSALSF QPRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.