Factsheet for VIT_04s0008g03190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15707	Soybean	cytosol	63.39	63.39
KRH61620	Soybean	cytosol	64.13	63.2
KRH05328	Soybean	cytosol	62.41	62.41
KRH52288	Soybean	cytosol	63.15	62.23
GSMUA_Achr7P11470_001	Banana	nucleus	49.14	56.82
Solyc08g067300.1.1	Tomato	nucleus	55.77	54.83
PGSC0003DMT400019032	Potato	nucleus	54.79	53.35
GSMUA_Achr10P...	Banana	cytosol	53.56	53.04
CDY71979	Canola	cytosol	50.37	52.03
Bra037018.1-P	Field mustard	cytosol	49.88	51.65
CDX72391	Canola	cytosol	50.12	51.65
Bra011423.1-P	Field mustard	nucleus	51.35	51.23
CDX68951	Canola	cytosol	51.35	50.85
CDX75335	Canola	nucleus	50.86	50.74
Os03t0399400-01	Rice	mitochondrion	45.95	45.83
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	44.47	45.14
TraesCS5B01G100300.1	Wheat	cytosol, plastid	43.98	44.53
KXG39191	Sorghum	nucleus	45.45	44.05
OQU90263	Sorghum	cytosol, mitochondrion, plastid	44.23	43.69
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	44.47	43.61
Os07t0617700-01	Rice	cytosol	43.49	43.6
TraesCS2A01G167400.1	Wheat	cytosol	43.98	42.93
TraesCS2D01G175100.1	Wheat	cytosol	43.98	42.93
TraesCS2B01G193700.1	Wheat	cytosol	43.73	42.89
Zm00001d006874_P001	Maize	cytosol	42.26	42.47
AT4G33160.2	Thale cress	cytosol	51.6	40.54
TraesCS5D01G106500.1	Wheat	cytosol	43.73	39.56
TraesCS5A01G094200.1	Wheat	cytosol	43.73	39.38
HORVU5Hr1G025530.5	Barley	cytosol	35.14	35.22
HORVU2Hr1G030810.1	Barley	plastid	44.23	32.97
VIT_15s0046g01540.t01	Wine grape	cytosol	21.38	21.07
VIT_01s0011g01220.t01	Wine grape	plastid	21.62	20.18
VIT_02s0025g00830.t01	Wine grape	cytosol	19.9	19.95
VIT_14s0083g00810.t01	Wine grape	cytosol	20.64	19.22
VIT_01s0010g03730.t01	Wine grape	cytosol	21.13	18.9
VIT_18s0001g09110.t01	Wine grape	plasma membrane	21.13	16.51

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100262953	wikigene:100262953	MapMan:35.1	ProteinID:CCB46689	ProteinID:CCB46689.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H2X8	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	EntrezGene:LOC100262953	wikigene:LOC100262953	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR45094	PANTHER:PTHR45094:SF2	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI00015C8655
ArrayExpress:VIT_04s0008g03190	EnsemblPlantsGene:VIT_04s0008g03190	EnsemblPlants:VIT_04s0008g03190.t01	unigene:Vvi.23001	RefSeq:XP_002281088	RefSeq:XP_002281088.1
RefSeq:XP_010648483.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:2648241..2649536

Molecular Weight (calculated)

46022.7 Da

IEP (calculated)

5.441

GRAVY (calculated)

-0.180

Length

407 amino acids

Sequence
(BLAST)

001: MQTDGGCCAP TASRKRKFPL DDLNQDLLER VLSWLPTSVF FRLTSVCKRW KSIADSATFQ LACSQIPSRD PWFFMVDPHL NQWVVFDSAE RNWKTLNHPP
101: LLQLNPNINS IPVAAHGGLI CFRNSSGHYI VCNPVTGSTR QLPLLDKPPQ NQSLHAIAMN SFSTSHHSYK LVLVYGELSS LTFRIYNSSV NLWEEEIRLS
201: RKAENPENSF QSDPDDDDET VYFLSITGNV VATNMQRSPS KQYSSVITRK DGGEEIVYFL SSSGTVVSCN LTCKLFYEYP KLLPALSEYS IDIVESKGEL
301: LVVVLSEFLE TASLRVWKFD EDTRAWRQIA AMPPAMSHEF YGKKVDINCA AAGHQILICI NSGELCRYIL CDLVANQWIE LPQCIKEDEA KEFMSAFSFE
401: PRIEASV

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.