CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71979	Canola	cytosol	93.16	93.4
CDX68951	Canola	cytosol	80.51	77.37
CDX75335	Canola	nucleus	79.49	76.96
AT4G33160.2	Thale cress	cytosol	77.72	59.27
KRH15707	Soybean	cytosol	53.16	51.6
KRH05328	Soybean	cytosol	53.16	51.6
VIT_04s0008g03190.t01	Wine grape	cytosol	51.65	50.12
KRH61620	Soybean	cytosol	50.89	48.67
KRH52288	Soybean	cytosol	48.61	46.49
GSMUA_Achr7P11470_001	Banana	nucleus	40.51	45.45
GSMUA_Achr10P...	Banana	cytosol	46.33	44.53
PGSC0003DMT400019032	Potato	nucleus	46.33	43.78
Solyc08g067300.1.1	Tomato	nucleus	45.57	43.48
OQU90263	Sorghum	cytosol, mitochondrion, plastid	42.28	40.53
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	40.76	40.15
Os07t0617700-01	Rice	cytosol	41.27	40.15
Os03t0399400-01	Rice	mitochondrion	41.01	39.71
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	41.52	39.52
Zm00001d006874_P001	Maize	cytosol	40.51	39.51
TraesCS2A01G167400.1	Wheat	cytosol	41.27	39.09
KXG39191	Sorghum	nucleus	41.52	39.05
TraesCS2B01G193700.1	Wheat	cytosol	40.76	38.8
TraesCS2D01G175100.1	Wheat	cytosol	40.76	38.61
TraesCS5B01G100300.1	Wheat	cytosol, plastid	38.99	38.31
TraesCS5D01G106500.1	Wheat	cytosol	40.25	35.33
TraesCS5A01G094200.1	Wheat	cytosol	39.24	34.29
HORVU5Hr1G025530.5	Barley	cytosol	30.89	30.05
HORVU2Hr1G030810.1	Barley	plastid	40.51	29.3
CDY15715	Canola	nucleus, plastid	24.05	20.47
CDY03911	Canola	nucleus, plastid	23.54	20.22
CDY27608	Canola	nucleus	23.29	19.78
CDX84930	Canola	cytosol, plastid	23.04	19.49
CDX78648	Canola	cytosol, plastid	20.76	18.85
CDX89124	Canola	cytosol	19.49	18.83
CDY43939	Canola	cytosol	19.75	18.7
CDX70633	Canola	cytosol, plastid	20.51	18.66
CDY52009	Canola	nucleus	18.73	18.18
CDY53910	Canola	cytosol	18.73	18.14
CDY32964	Canola	plastid	18.23	18.09
CDY43599	Canola	plastid	18.23	17.87
CDX71729	Canola	mitochondrion	20.0	17.79
CDY12448	Canola	plastid	20.0	17.71
CDY52183	Canola	plastid	20.0	17.71
CDY11364	Canola	cytosol, golgi, nucleus	20.25	17.58

Protein Annotations

EnsemblPlants:CDX72391	EnsemblPlantsGene:GSBRNA2T00099884001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR45094	PANTHER:PTHR45094:SF2
PFAM:PF00646	PFscan:PS50181	ProteinID:CDX72391	ProteinID:CDX72391.1	SEG:seg	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0004EE8CCD	MapMan:35.1	:	:

Description

BnaC07g44130D

Coordinates

chrLK031796:+:999517..1001272

Molecular Weight (calculated)

44370.7 Da

IEP (calculated)

5.482

GRAVY (calculated)

-0.142

Length

395 amino acids

Sequence
(BLAST)

001: MGFSAGKRKS RDEAVTLSDL NDDVLERVLS RLPTSSYFRM TSVCKRWKST QTSTTFKLAC SQVPYRDPWF FMIAKDCTSS SSFVYDSTEN SWRNLSRPLL
101: HHRRDLFSPV ASSGGLLCFR SSVSGHFLLR NPLTGSSIDL PCQDDNKPLQ AVAMTTSYKL VTISGEVPNL CFKFYESSSC SWSKEFELVK KNDEYNDDDD
201: DTETVYFLSK SGNVVVASNT LLRSPSKQYS SVITVKDNVE TVYFLTSHGT IIACDLTKRS FTQLPKLLPP FLEYSIDLVE CNGTMFVVLL SEFYESASLR
301: IWKLEDMSWV HVGMLPPAMS HELYGRKGDI NCVGGAGGNK ILVCFNADLP EVCCRYFVFD LVGEEWSELP RCFSGGEAVE FVSALSFQPR IEATV

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.