CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52288	Soybean	cytosol	92.74	92.74
KRH05328	Soybean	cytosol	77.97	79.12
KRH15707	Soybean	cytosol	77.24	78.38
VIT_04s0008g03190.t01	Wine grape	cytosol	63.2	64.13
GSMUA_Achr7P11470_001	Banana	nucleus	46.73	54.83
GSMUA_Achr10P...	Banana	cytosol	53.51	53.77
CDY71979	Canola	cytosol	48.67	51.02
CDX72391	Canola	cytosol	48.67	50.89
Bra037018.1-P	Field mustard	cytosol	48.18	50.64
Bra011423.1-P	Field mustard	nucleus	49.88	50.49
CDX68951	Canola	cytosol	49.88	50.12
PGSC0003DMT400019032	Potato	nucleus	50.61	50.0
CDX75335	Canola	nucleus	49.15	49.75
Solyc08g067300.1.1	Tomato	nucleus	49.64	49.52
Os03t0399400-01	Rice	mitochondrion	44.79	45.34
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	42.86	44.14
TraesCS5B01G100300.1	Wheat	cytosol, plastid	42.37	43.53
TraesCS2D01G175100.1	Wheat	cytosol	43.1	42.69
TraesCS2B01G193700.1	Wheat	cytosol	42.62	42.41
KXG39191	Sorghum	nucleus	43.1	42.38
AT4G33160.2	Thale cress	cytosol	53.03	42.28
TraesCS2A01G167400.1	Wheat	cytosol	42.62	42.21
Os07t0617700-01	Rice	cytosol	41.4	42.12
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	41.89	41.69
OQU90263	Sorghum	cytosol, mitochondrion, plastid	41.4	41.5
Zm00001d006874_P001	Maize	cytosol	39.71	40.49
TraesCS5D01G106500.1	Wheat	cytosol	42.62	39.11
TraesCS5A01G094200.1	Wheat	cytosol	41.89	38.27
HORVU5Hr1G025530.5	Barley	cytosol	33.17	33.74
HORVU2Hr1G030810.1	Barley	plastid	42.86	32.42
KRH52086	Soybean	plastid	17.68	20.98
KRH61403	Soybean	plastid	17.68	20.33
KRH31515	Soybean	cytosol	21.79	20.0
KRH15449	Soybean	cytosol, mitochondrion, nucleus	18.64	19.85
KRH45144	Soybean	cytosol, plastid	20.58	19.41
KRH68853	Soybean	cytosol	18.89	19.35
KRH58532	Soybean	plastid	20.1	19.3
KRH42677	Soybean	cytosol, nucleus, plasma membrane	21.07	19.21
KRG97101	Soybean	cytosol	18.64	19.01
KRH42420	Soybean	plastid	20.1	18.86
KRG97395	Soybean	cytosol	21.07	18.83
KRH58777	Soybean	cytosol	20.34	18.5
KRH01425	Soybean	cytosol	20.1	18.36
KRH47995	Soybean	cytosol	10.9	16.73

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100786481	MapMan:35.1	EMBL:ACUP02002178	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_04G058200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	UniProt:I1JU39	InterPro:IPR001810	InterPro:IPR015915
EnsemblPlants:KRH61620	ProteinID:KRH61620	ProteinID:KRH61620.1	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR45094	PANTHER:PTHR45094:SF2	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00023394D2

Description

hypothetical protein

Coordinates

chr4:-:4770261..4772697

Molecular Weight (calculated)

46357.1 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.101

Length

413 amino acids

Sequence
(BLAST)

001: MECNDQHVSV NLKRKSPENG ERVLFNTFSL DDLNEDLFER ILSWLPTSTF FRLNSVCKRW KSVAASASFK LACSHIPSRD PWFLMVAPNL NQSVILDSAE
101: STWKRLNHPP LLQEESNQDC VPVAASGGLI CYRKSSGNFI VTNPVTGSCR KLPPLQFASQ NQPLNAIVMS TSSKDQLSFK IVLVFGELPN LLFKVYNSGS
201: NCWEGETALR RKTEDNSIEY DSTDDNVVYF LSKAGFVVAS NMQRSPSKQF SSVITNKDGQ EIVYFLSSSG NVVACNLTCK CFFEYPRLLP VFSEYSIDVV
301: ECNGEMLVVL LSEFLEIATL RVWKYDEASR GWHQIAAMPA ANSHEWYGKK ADINCVGAGN QIFICLNSPE LCTYVVCDLE TNKWVEFPKC CINGEVIDFM
401: SALSFEPRIE ASV

Best Arabidopsis Sequence Match ( AT4G33160.2 )
(BLAST)

001: MFTGYSFGFG DSSEEEVAQH TIFPFLLVSL SPQEYLLCRG LSTLFDRGAQ EASLLSLSLS SMPSSATSTY LLSLKQVSLT ASSPLLLQLK DRFFHQPKLL
101: NMGFSTGKRK SRDEEEDRVS FFASEFPMDD LNDDVLERVL SWLPTSCFFR MSSVCKRWKS SQTSKSFKLA CSQIPTRDPW FFMIDNDSNS SSFVFDSTEN
201: SWKNLNRRDF LHHHRQDFIP VASSGGLLCY RCSISGDFLL RNPLTGSSRD IPSQDNNNNK PLQAVAMTTT TVTPSSYTLV TISGEIPNLS FKIYESNADS
301: WSKDQELESV KNNDSSLHDD YDTDSGTVYF LSKQGNVVVA SNNLQRSPSK QYSSVITVTD EAEIVYFLSS YGTIVACDLT KRCFTELPKL LPPFLEYSID
401: LVECEGTMYV ILLSEFFESA SLRIWRLDNN REWVQVGMLP PALSHELYGK KGDINCVGGA GNKILVCFNA SPPEVYCRYF VYDLVAEEWN ELPKCFKDGE
501: AVDFVSALSF QPRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.