CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96405
KRH07712
KRH10462
KRH23810
KRH25650
KRH33363
KRH39972
KRH43983
KRH48239
KRH51760
KRH52586
KRH56376
KRH61083
KRH61926
KRH62556
KRH65148
KRH66520
KRH68142

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30950.1	KRH52586	AT1G22920.1	12724534
AT1G30950.1	KRH61926	AT1G22920.1	12724534
AT1G30950.1	KRH07712	AT3G54340.1	18287201
AT1G30950.1	KRH25650	AT3G54340.1	18287201
AT1G30950.1	KRH51760	AT3G54340.1	18287201
AT1G30950.1	KRH61083	AT3G54340.1	18287201
AT1G30950.1	KRH66520	AT3G54340.1	18287201
AT1G30950.1	KRH48239	AT3G61140.1	12724534
AT1G30950.1	KRH65148	AT3G61140.1	12724534
AT1G30950.1	KRG96405	AT4G02570.1	12724534
AT1G30950.1	KRH68142	AT4G02570.1	12724534
AT1G30950.1	KRH10462	AT4G14110.1	12724534
AT1G30950.1	KRH33363	AT4G14110.1	12724534
AT1G30950.1	KRH43983	AT4G14110.1	12724534
AT1G30950.1	KRH23810	AT5G42970.1	12724534
AT1G30950.1	KRH39972	AT5G42970.1	12724534
AT1G30950.1	KRH56376	AT5G56280.1	12724534
AT1G30950.1	KRH62556	AT5G56280.1	12724534

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42420	Soybean	plastid	96.74	94.55
VIT_01s0011g01220.t01	Wine grape	plastid	73.95	72.94
AT1G30950.1	Thale cress	plastid	67.21	65.38
CDY52183	Canola	plastid	67.21	64.8
Solyc02g081670.1.1	Tomato	plastid	68.37	64.62
CDY12448	Canola	plastid	66.98	64.57
Bra039878.1-P	Field mustard	plastid	66.74	64.49
PGSC0003DMT400045739	Potato	plastid	68.6	64.41
GSMUA_Achr3P23630_001	Banana	plastid	48.37	54.45
Os06t0665400-01	Rice	plastid	43.49	43.59
HORVU7Hr1G108970.1	Barley	cytosol, plasma membrane, plastid	44.19	43.38
TraesCS7D01G468700.1	Wheat	plastid	43.72	42.73
TraesCS7A01G481600.1	Wheat	plastid	43.49	42.5
Zm00001d036653_P001	Maize	plastid	43.02	42.43
OQU76836	Sorghum	plastid	42.33	42.23
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	42.33	42.03
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	43.49	38.72
KRH45144	Soybean	cytosol, plastid	24.42	23.97
KRH52086	Soybean	plastid	18.37	22.7
KRH61403	Soybean	plastid	18.6	22.28
KRG97101	Soybean	cytosol	20.93	22.22
KRH01425	Soybean	cytosol	23.26	22.12
KRH15707	Soybean	cytosol	20.93	22.11
KRH68853	Soybean	cytosol	20.7	22.08
KRH42677	Soybean	cytosol, nucleus, plasma membrane	23.26	22.08
KRH58777	Soybean	cytosol	23.02	21.81
KRH05328	Soybean	cytosol	20.23	21.38
KRH15449	Soybean	cytosol, mitochondrion, nucleus	19.07	21.13
KRH31515	Soybean	cytosol	21.4	20.44
KRH61620	Soybean	cytosol	19.3	20.1
KRG97395	Soybean	cytosol	21.16	19.7
KRH52288	Soybean	cytosol	18.37	19.13
KRH47995	Soybean	cytosol	11.86	18.96

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100805253	MapMan:19.2.2.8.1.4.3	EMBL:ACUP02003268	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_05G134000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146
InterPro:Gal_Oxase/kelch_b-propeller	UniProt:I1K384	InterPro:IPR001810	EnsemblPlants:KRH58532	ProteinID:KRH58532	ProteinID:KRH58532.1
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR45371	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
UniParc:UPI000233A9DF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:32687186..32688478

Molecular Weight (calculated)

48381.4 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.024

Length

430 amino acids

Sequence
(BLAST)

001: MEGFHPSMSS PFSYTFPISG AGTSNYSTST PWMNSRIWSK LPQRLLDRVI AFLPPPAFFR ARCVCKRWYA LLFSNTFLEL YLQVSPHQHW FLFFKHHKTR
101: KSYIYKNNNN GTSGGCGHHG GAFEGYLFDP YEMAWYRISF ALVPSGFSPA SSSAGLLCWV SDEAGPKTML LSNPLIGSLT QLPPTLRPRL FPSIGLTISP
201: TCIDVTVAGD DMISPYAVKN LTSESFHIDG GGFFSLWGTT SSLPRLCSLE SGRMVYAEGK FYCMNCSPFS VLAYDITSNT WFKIQAPMRR FLRSPNLVEC
301: KGKLLLVAAV EKSKLNVPKS LRVWSLQACG TMWVESERMP QQLYVQFAEL EDGNGFECVG HGEFIVIMIR GTDKALLFDI CRKRWQWIPP CPYIAHDGFE
401: LHGFAYEPRL ATPVTGLLDQ LALPFQSFNA

Best Arabidopsis Sequence Match ( AT1G30950.1 )
(BLAST)

001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC

Arabidopsis Description

UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.