CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93698
KRH01380
KRH16433
KRH18034
KRH18339
KRH42420
KRH45097
KRH53304
KRH58532
KRH64611

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	KRH42420	AT1G30950.1	18287201
AT3G54340.1	KRH58532	AT1G30950.1	18287201
AT3G54340.1	KRG93698	AT3G02310.1	15604664
AT3G54340.1	KRH01380	AT3G02310.1	15604664
AT3G54340.1	KRH18339	AT3G02310.1	15604664
AT3G54340.1	KRH45097	AT3G02310.1	15604664
AT3G54340.1	KRH16433	AT5G20240.1	15604664
AT3G54340.1	KRH18034	AT5G20240.1	15604664
AT3G54340.1	KRH53304	AT5G20240.1	15604664
AT3G54340.1	KRH64611	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66520	Soybean	nucleus	100.0	100.0
KRH07712	Soybean	nucleus	99.24	99.24
KRH61083	Soybean	nucleus	84.85	80.58
KRH51760	Soybean	nucleus	87.12	50.66
GSMUA_Achr9P20940_001	Banana	nucleus	34.09	44.12
CDY69833	Canola	nucleus	57.58	42.94
VIT_18s0001g13460.t01	Wine grape	nucleus	69.7	40.71
PGSC0003DMT400009510	Potato	nucleus	68.94	39.91
Solyc04g081000.2.1	Tomato	nucleus	68.18	39.47
Bra014822.1-P	Field mustard	nucleus	59.09	34.82
CDX76152	Canola	nucleus	59.09	34.82
CDY13200	Canola	nucleus	58.33	34.38
Bra007067.1-P	Field mustard	nucleus	58.33	33.19
CDX73487	Canola	nucleus	58.33	33.19
GSMUA_Achr9P20950_001	Banana	nucleus	56.06	32.89
AT3G54340.1	Thale cress	nucleus	57.58	32.76
Os06t0712700-01	Rice	nucleus	55.3	32.59
EER90370	Sorghum	nucleus	55.3	32.3
TraesCS7D01G380300.1	Wheat	nucleus	55.3	32.16
TraesCS7B01G286600.2	Wheat	nucleus	55.3	31.88
Zm00001d036425_P002	Maize	nucleus	53.79	31.28
TraesCS7A01G383800.1	Wheat	nucleus	55.3	30.8
HORVU7Hr1G091210.4	Barley	nucleus, plastid	55.3	30.67
KRH28746	Soybean	nucleus	52.27	29.49
KRH76708	Soybean	nucleus	53.79	29.22
TraesCS6D01G120900.1	Wheat	nucleus	51.52	28.45
TraesCS6B01G159400.1	Wheat	nucleus	49.24	28.14
TraesCS6A01G131100.1	Wheat	nucleus	47.73	26.36
KRH64611	Soybean	nucleus	35.61	25.97
KRH53304	Soybean	nucleus	35.61	25.97
KRH16433	Soybean	nucleus	38.64	24.52
KRH18034	Soybean	nucleus	37.88	24.04
KRH40895	Soybean	nucleus	40.91	22.13
KRG89112	Soybean	nucleus	40.91	22.04

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02001978	EMBL:ACUP02007307	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G118100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
UniProt:I1LS77	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EnsemblPlants:KRH25650	ProteinID:KRH25650
ProteinID:KRH25650.1	ProteinID:KRH66520.1	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF219	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00023D01CC	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:12140062..12140822

Molecular Weight (calculated)

15468.0 Da

IEP (calculated)

9.601

GRAVY (calculated)

-0.495

Length

132 amino acids

Sequence
(BLAST)

001: MARGKIQIKR IENTTKKANE LTVLCDAKVS IIMFSSTGKL HKIEQSTKQF FDQYQMTLGV DIWNSHYENM QENLKKLKEV NRNLRKEFRM GDCLNELGME
101: DLRLLEEGMD KAAKVVRERK VRLIICSSFC FT

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.