Factsheet for Bra014822.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002285.1-P
Bra006549.1-P
Bra020093.1-P
Bra021470.1-P
Bra039170.1-P
Bra039878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	Bra039878.1-P	AT1G30950.1	18287201
AT3G54340.1	Bra021470.1-P	AT3G02310.1	15604664
AT3G54340.1	Bra039170.1-P	AT3G02310.1	15604664
AT3G54340.1	Bra002285.1-P	AT5G20240.1	15604664
AT3G54340.1	Bra006549.1-P	AT5G20240.1	15604664
AT3G54340.1	Bra020093.1-P	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76152	Canola	nucleus	99.55	99.55
Bra007067.1-P	Field mustard	nucleus	98.21	94.83
AT3G54340.1	Thale cress	nucleus	94.64	91.38
KRH61083	Soybean	nucleus	42.86	69.06
GSMUA_Achr9P20940_001	Banana	nucleus	27.23	59.8
Solyc04g081000.2.1	Tomato	nucleus	60.27	59.21
KRH66520	Soybean	nucleus	34.82	59.09
KRH25650	Soybean	nucleus	34.82	59.09
KRH07712	Soybean	nucleus	34.82	59.09
VIT_18s0001g13460.t01	Wine grape	nucleus	58.93	58.41
PGSC0003DMT400009510	Potato	nucleus	59.38	58.33
KRH51760	Soybean	nucleus	54.02	53.3
GSMUA_Achr9P20950_001	Banana	nucleus	49.55	49.33
TraesCS7B01G286600.2	Wheat	nucleus	49.11	48.03
TraesCS7D01G380300.1	Wheat	nucleus	48.66	48.02
EER90370	Sorghum	nucleus	48.21	47.79
Os06t0712700-01	Rice	nucleus	47.32	47.32
Zm00001d036425_P002	Maize	nucleus	47.77	47.14
TraesCS7A01G383800.1	Wheat	nucleus	49.11	46.41
TraesCS6B01G159400.1	Wheat	nucleus	41.96	40.69
TraesCS6D01G120900.1	Wheat	nucleus	42.41	39.75
Bra002285.1-P	Field mustard	nucleus	25.89	39.73
TraesCS6A01G131100.1	Wheat	nucleus	41.07	38.49
HORVU7Hr1G091210.4	Barley	nucleus, plastid	39.73	37.4
Bra006549.1-P	Field mustard	nucleus	28.57	30.77
Bra020093.1-P	Field mustard	nucleus	26.34	29.06
Bra013028.1-P	Field mustard	nucleus	29.91	27.92
Bra029365.1-P	Field mustard	nucleus	29.02	26.86
Bra026507.1-P	Field mustard	nucleus	29.02	20.77

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AAO84016	ProteinID:AAO84016.1	EMBL:AY232727	EnsemblPlantsGene:Bra014822
EnsemblPlants:Bra014822.1	EnsemblPlants:Bra014822.1-P	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:M4DEA1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF219
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002545094
SEG:seg	:	:	:	:	:

Description

AT3G54340 (E=6e-104) AP3, ATAP3 | AP3 (APETALA 3); DNA binding / transcription factor

Coordinates

chrA04:+:3390486..3392345

Molecular Weight (calculated)

26394.4 Da

IEP (calculated)

8.659

GRAVY (calculated)

-0.839

Length

224 amino acids

Sequence
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEFISP NTTTKEIIDL YQTVSDVDVW SAHYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRSLEEEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV ENGGDYDSVL GYQLRFHQNH
201: HHHYPNHALH AASASDIITF HLLE

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.