Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G286600.2 | Wheat | nucleus | 96.2 | 99.56 |
| TraesCS7D01G380300.1 | Wheat | nucleus | 95.36 | 99.56 |
| EER90370 | Sorghum | nucleus | 88.19 | 92.48 |
| Os06t0712700-01 | Rice | nucleus | 85.23 | 90.18 |
| Zm00001d036425_P002 | Maize | nucleus | 84.81 | 88.55 |
| TraesCS6A01G131100.1 | Wheat | nucleus | 73.0 | 72.38 |
| GSMUA_Achr9P20940_001 | Banana | nucleus | 29.54 | 68.63 |
| HORVU7Hr1G091210.4 | Barley | nucleus, plastid | 63.71 | 63.45 |
| KRH61083 | Soybean | nucleus | 37.13 | 63.31 |
| VIT_18s0001g13460.t01 | Wine grape | nucleus | 53.59 | 56.19 |
| KRH25650 | Soybean | nucleus | 30.8 | 55.3 |
| KRH66520 | Soybean | nucleus | 30.8 | 55.3 |
| KRH07712 | Soybean | nucleus | 30.38 | 54.55 |
| Solyc02g084630.2.1 | Tomato | nucleus | 50.63 | 53.33 |
| CDY69833 | Canola | nucleus | 39.66 | 53.11 |
| PGSC0003DMT400009510 | Potato | nucleus | 51.05 | 53.07 |
| PGSC0003DMT400009112 | Potato | nucleus | 50.21 | 52.89 |
| Solyc04g081000.2.1 | Tomato | nucleus | 50.21 | 52.19 |
| KRH51760 | Soybean | nucleus | 49.79 | 51.98 |
| CDX76152 | Canola | nucleus | 46.84 | 49.55 |
| AT3G54340.1 | Thale cress | nucleus | 48.1 | 49.14 |
| CDX73487 | Canola | nucleus | 48.1 | 49.14 |
| Bra014822.1-P | Field mustard | nucleus | 46.41 | 49.11 |
| CDY13200 | Canola | nucleus | 46.41 | 49.11 |
| Bra007067.1-P | Field mustard | nucleus | 47.68 | 48.71 |
| KRH28746 | Soybean | nucleus | 44.3 | 44.87 |
| KRH76708 | Soybean | nucleus | 45.57 | 44.44 |
| VIT_04s0023g02820.t01 | Wine grape | nucleus | 55.27 | 42.81 |
| TraesCS3A01G406500.2 | Wheat | nucleus | 34.18 | 38.76 |
| TraesCS1A01G264300.1 | Wheat | nucleus | 30.8 | 35.1 |
| TraesCS3A01G284400.1 | Wheat | nucleus | 27.43 | 30.52 |
| TraesCS6A01G158100.1 | Wheat | nucleus | 32.07 | 30.16 |
| TraesCS2A01G422400.2 | Wheat | nucleus | 31.22 | 27.21 |
| TraesCS7A01G475000.1 | Wheat | nucleus | 25.32 | 26.67 |
| TraesCS3A01G090300.1 | Wheat | nucleus | 24.89 | 26.22 |
| TraesCS3A01G090900.1 | Wheat | nucleus | 24.89 | 25.99 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF251 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS7A01G383800 |
| EnsemblPlants:TraesCS7A01G383800.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:559199983..559206509
Molecular Weight (calculated)
26726.8 Da
IEP (calculated)
8.611
GRAVY (calculated)
-0.629
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENATNRQVT YSKRRSGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCST GTDIKGIFDR YQQAIGTSLW IEQYENMQRT LNHLKDINRN
101: LRTEIRQRMG EDLDALEFEE LRDLEQNVDA ALKEVRQRKY HVITTQTETY KKKVKHSQEA YKNLQQELGM REDPAYGFVD NPAAGGWDGV AAGGWDGVAA
201: VAMGGGSAAD MYAFRVVPSQ PNLHGMAYGG SHDLRLG
101: LRTEIRQRMG EDLDALEFEE LRDLEQNVDA ALKEVRQRKY HVITTQTETY KKKVKHSQEA YKNLQQELGM REDPAYGFVD NPAAGGWDGV AAGGWDGVAA
201: VAMGGGSAAD MYAFRVVPSQ PNLHGMAYGG SHDLRLG
001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
Arabidopsis Description
AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.