Factsheet for Solyc02g084630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009112	Potato	nucleus	96.89	96.89
GSMUA_Achr9P20940_001	Banana	nucleus	28.0	61.76
KRH28746	Soybean	nucleus	59.56	57.27
GSMUA_Achr9P20950_001	Banana	nucleus	56.89	56.89
KRH76708	Soybean	nucleus	61.33	56.79
Solyc04g081000.2.1	Tomato	nucleus	56.0	55.26
EER90370	Sorghum	nucleus	53.78	53.54
Zm00001d036425_P002	Maize	nucleus	53.33	52.86
TraesCS7B01G286600.2	Wheat	nucleus	53.33	52.4
TraesCS7D01G380300.1	Wheat	nucleus	52.44	51.98
VIT_04s0023g02820.t01	Wine grape	nucleus	70.67	51.96
Os06t0712700-01	Rice	nucleus	51.56	51.79
TraesCS7A01G383800.1	Wheat	nucleus	53.33	50.63
TraesCS6B01G159400.1	Wheat	nucleus	44.44	43.29
TraesCS6D01G120900.1	Wheat	nucleus	44.89	42.26
Solyc06g059970.2.1	Tomato	nucleus	37.33	39.25
TraesCS6A01G131100.1	Wheat	nucleus	41.33	38.91
HORVU7Hr1G091210.4	Barley	nucleus, plastid	40.89	38.66
Solyc08g067230.2.1	Tomato	nucleus	34.67	37.14
Solyc11g005120.1.1	Tomato	nucleus	28.0	26.47

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:K4BAX8	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF251	SMART:SM00432
SUPFAM:SSF55455	EnsemblPlantsGene:Solyc02g084630.2	EnsemblPlants:Solyc02g084630.2.1	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001E22EDE	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:47713564..47717334

Molecular Weight (calculated)

26094.2 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.854

Length

225 amino acids

Sequence
(BLAST)

001: MGRGKIEIKK IENSTNRQVT YSKRRNGIFK KAKELTVLCD AKISLIMLSS TRKYHEYTSP NTTTKKMIDQ YQSALGVDIW SIHYEKMQEN LKRLKEINNK
101: LRREIRQRTG EDMSGLNLQE LCHLQENITE SVAEIRERKY HVIKNQTDTC KKKARNLEEQ NGNLVLDLEA KCEDPKYGVV ENEGHYHSAV AFANGVHNLY
201: AFRLQPLHPN LQNEGGFGSR DLRLS

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.