Factsheet for Solyc08g067230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019069	Potato	cytosol	28.1	98.33
PGSC0003DMT400019070	Potato	nucleus	97.14	97.14
KRH64611	Soybean	nucleus	57.62	66.85
KRH53304	Soybean	nucleus	56.67	65.75
KRH18034	Soybean	nucleus	64.76	65.38
KRH16433	Soybean	nucleus	63.81	64.42
VIT_18s0001g01760.t01	Wine grape	nucleus	64.29	63.68
Solyc06g059970.2.1	Tomato	nucleus	63.33	62.15
GSMUA_Achr6P18670_001	Banana	nucleus	54.76	54.5
GSMUA_Achr5P01230_001	Banana	nucleus	54.29	54.03
EES01864	Sorghum	nucleus	52.38	52.63
TraesCS3A01G406500.2	Wheat	nucleus	52.38	52.63
TraesCS3D01G401700.1	Wheat	nucleus	52.38	52.63
TraesCS3B01G440200.3	Wheat	nucleus	52.38	51.4
Zm00001d010232_P001	Maize	nucleus	50.95	50.47
Os01t0883100-01	Rice	nucleus	50.0	50.24
EES18254	Sorghum	nucleus	50.48	50.0
TraesCS1A01G264300.1	Wheat	nucleus	49.05	49.52
TraesCS1B01G275000.1	Wheat	nucleus	49.05	49.52
Zm00001d042618_P001	Maize	nucleus	52.38	48.89
Os05t0423400-01	Rice	nucleus	50.0	48.84
HORVU1Hr1G063620.1	Barley	nucleus	48.57	45.74
TraesCS1D01G264500.1	Wheat	nucleus	43.81	42.2
Zm00001d010233_P004	Maize	nucleus	50.48	41.41
HORVU3Hr1G091000.8	Barley	nucleus, plastid	52.86	40.66
Solyc02g084630.2.1	Tomato	nucleus	37.14	34.67
Solyc04g081000.2.1	Tomato	nucleus	37.14	34.21
Solyc11g005120.1.1	Tomato	nucleus	37.14	32.77

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010093	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K4CLU9	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF97	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc08g067230.2	EnsemblPlants:Solyc08g067230.2.1	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000276C271	:	:	:

Description

No Description!

Coordinates

chr8:+:56259635..56264252

Molecular Weight (calculated)

24741.7 Da

IEP (calculated)

8.691

GRAVY (calculated)

-0.867

Length

210 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD AHVSVIIFAT SGKMHEFSST SLVDILDQYH KLTGRRLWDA KHENLDNEIN KVKKDNDNMQ
101: IELRHLKGED ISSLNYRELM ILEDALENGL TGIREKQNEF MRMMRKKTQN MEQEQDQLNC QLRQLEIASM NRNMGEIGEV FEQTRENHDY GQMPFAFRVQ
201: PMQPNLHQRF

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.