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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_01s0011g01560.t01 Wine grape nucleus 47.48 50.45
VIT_10s0042g00820.t01 Wine grape nucleus 50.0 50.42
CDY45758 Canola nucleus 50.84 50.0
Bra013028.1-P Field mustard nucleus 50.0 49.58
CDY02217 Canola nucleus 50.0 49.58
CDY40800 Canola nucleus 49.16 48.35
CDY69354 Canola nucleus 47.48 46.69
Bra029365.1-P Field mustard nucleus 47.48 46.69
CDX87180 Canola nucleus 47.06 45.71
KRH40895 Soybean nucleus 46.22 45.08
KRG89112 Soybean nucleus 45.8 44.49
GSMUA_Achr3P23580_001 Banana nucleus 42.86 42.32
VIT_02s0025g02350.t01 Wine grape nucleus 36.55 42.23
AT5G23260.4 Thale cress nucleus 46.22 41.04
GSMUA_Achr2P02660_001 Banana nucleus 40.34 40.0
Zm00001d018587_P001 Maize nucleus 28.15 39.65
Os04t0614100-00 Rice nucleus 28.99 38.76
Solyc08g067230.2.1 Tomato nucleus 32.77 37.14
Zm00001d015381_P001 Maize nucleus 39.92 36.54
EES06346 Sorghum nucleus 39.08 36.05
CDY16841 Canola nucleus 47.9 35.85
Os02t0170300-01 Rice nucleus 39.08 35.77
Os06t0667200-01 Rice nucleus 33.19 35.75
TraesCS6D01G147400.1 Wheat nucleus 37.4 35.32
TraesCS6A01G158100.1 Wheat nucleus 37.4 35.32
TraesCS6B01G186700.1 Wheat nucleus 37.4 35.18
Bra026507.1-P Field mustard nucleus 46.22 35.14
HORVU6Hr1G032220.7 Barley nucleus 38.24 35.0
KXG20558 Sorghum nucleus 33.19 33.05
TraesCS3D01G090300.1 Wheat nucleus 30.25 32.88
TraesCS1D01G441200.1 Wheat nucleus 26.05 32.63
Solyc06g059970.2.1 Tomato nucleus 28.57 31.78
TraesCS3D01G102700.1 Wheat nucleus 30.25 31.44
OQU82318 Sorghum nucleus 33.61 31.13
TraesCS3A01G090300.1 Wheat nucleus 28.99 30.67
Zm00001d018767_P001 Maize nucleus 32.77 30.59
TraesCS2B01G440900.1 Wheat nucleus 32.35 30.43
TraesCS3B01G105700.2 Wheat nucleus 28.99 30.4
TraesCS3A01G090900.1 Wheat nucleus 28.99 30.4
Zm00001d003168_P001 Maize nucleus 30.67 30.29
TraesCS7A01G475000.1 Wheat nucleus 27.73 29.33
TraesCS2D01G418800.2 Wheat nucleus 32.35 28.41
TraesCS2A01G422400.2 Wheat nucleus 32.35 28.31
HORVU2Hr1G098930.3 Barley nucleus 32.77 28.26
Solyc02g084630.2.1 Tomato nucleus 26.47 28.0
Solyc04g081000.2.1 Tomato nucleus 26.47 27.63
Zm00001d041587_P001 Maize nucleus 15.13 26.67
Zm00001d033701_P001 Maize nucleus 26.89 26.45
Zm00001d020114_P001 Maize nucleus 24.79 26.22
TraesCS7B01G377700.1 Wheat nucleus 24.79 26.11
HORVU7Hr1G108280.4 Barley nucleus, plastid 28.15 25.09
HORVU7Hr1G108410.1 Barley nucleus 21.85 23.85
Zm00001d031591_P001 Maize nucleus 28.99 23.79
Zm00001d047742_P001 Maize nucleus 29.41 20.53
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10ncoils:CoilGO:GO:0000003GO:GO:0000977GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009791GO:GO:0009987
GO:GO:0045944GO:GO:0046983GO:GO:0048316InterPro:IPR002100InterPro:IPR002487InterPro:IPR036879
UniProt:K4D4C5InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486PRINTS:PR00404ScanProsite:PS00350
PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF257SMART:SM00432SUPFAM:SSF55455
EnsemblPlantsGene:Solyc11g005120.1EnsemblPlants:Solyc11g005120.1.1InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sfInterPro:TT16-like
UniParc:UPI0002769796:::::
Description
Protein TRANSPARENT TESTA 16 [Source:Projected from Arabidopsis thaliana (AT5G23260) UniProtKB/Swiss-Prot;Acc:Q8RYD9]
Coordinates
chr11:-:107329..109329
Molecular Weight (calculated)
27793.3 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.785
Length
238 amino acids
Sequence
(BLAST)
001: MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST KGKLFEYTTQ PHSMGEIINK YLQTTGASLP IHDHRVEQYD EITKMKRETL
101: NLELSLQRYK GDELNSAQYD ELNELEKQLE NSINKIRARK LELLQQQMEN LKRTEKMLEK ENHDMCQWLM KYEMYKQQPV AMMEQQEEAA ITELNLLGEQ
201: PLLSQFSFFG DQHQLGTTSN SSAYHLQTSH PFTPSTYD
Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)
001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND
Arabidopsis Description
TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.