Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_01s0011g01560.t01 | Wine grape | nucleus | 47.48 | 50.45 |
VIT_10s0042g00820.t01 | Wine grape | nucleus | 50.0 | 50.42 |
CDY45758 | Canola | nucleus | 50.84 | 50.0 |
Bra013028.1-P | Field mustard | nucleus | 50.0 | 49.58 |
CDY02217 | Canola | nucleus | 50.0 | 49.58 |
CDY40800 | Canola | nucleus | 49.16 | 48.35 |
CDY69354 | Canola | nucleus | 47.48 | 46.69 |
Bra029365.1-P | Field mustard | nucleus | 47.48 | 46.69 |
CDX87180 | Canola | nucleus | 47.06 | 45.71 |
KRH40895 | Soybean | nucleus | 46.22 | 45.08 |
KRG89112 | Soybean | nucleus | 45.8 | 44.49 |
GSMUA_Achr3P23580_001 | Banana | nucleus | 42.86 | 42.32 |
VIT_02s0025g02350.t01 | Wine grape | nucleus | 36.55 | 42.23 |
AT5G23260.4 | Thale cress | nucleus | 46.22 | 41.04 |
GSMUA_Achr2P02660_001 | Banana | nucleus | 40.34 | 40.0 |
Zm00001d018587_P001 | Maize | nucleus | 28.15 | 39.65 |
Os04t0614100-00 | Rice | nucleus | 28.99 | 38.76 |
Solyc08g067230.2.1 | Tomato | nucleus | 32.77 | 37.14 |
Zm00001d015381_P001 | Maize | nucleus | 39.92 | 36.54 |
EES06346 | Sorghum | nucleus | 39.08 | 36.05 |
CDY16841 | Canola | nucleus | 47.9 | 35.85 |
Os02t0170300-01 | Rice | nucleus | 39.08 | 35.77 |
Os06t0667200-01 | Rice | nucleus | 33.19 | 35.75 |
TraesCS6D01G147400.1 | Wheat | nucleus | 37.4 | 35.32 |
TraesCS6A01G158100.1 | Wheat | nucleus | 37.4 | 35.32 |
TraesCS6B01G186700.1 | Wheat | nucleus | 37.4 | 35.18 |
Bra026507.1-P | Field mustard | nucleus | 46.22 | 35.14 |
HORVU6Hr1G032220.7 | Barley | nucleus | 38.24 | 35.0 |
KXG20558 | Sorghum | nucleus | 33.19 | 33.05 |
TraesCS3D01G090300.1 | Wheat | nucleus | 30.25 | 32.88 |
TraesCS1D01G441200.1 | Wheat | nucleus | 26.05 | 32.63 |
Solyc06g059970.2.1 | Tomato | nucleus | 28.57 | 31.78 |
TraesCS3D01G102700.1 | Wheat | nucleus | 30.25 | 31.44 |
OQU82318 | Sorghum | nucleus | 33.61 | 31.13 |
TraesCS3A01G090300.1 | Wheat | nucleus | 28.99 | 30.67 |
Zm00001d018767_P001 | Maize | nucleus | 32.77 | 30.59 |
TraesCS2B01G440900.1 | Wheat | nucleus | 32.35 | 30.43 |
TraesCS3B01G105700.2 | Wheat | nucleus | 28.99 | 30.4 |
TraesCS3A01G090900.1 | Wheat | nucleus | 28.99 | 30.4 |
Zm00001d003168_P001 | Maize | nucleus | 30.67 | 30.29 |
TraesCS7A01G475000.1 | Wheat | nucleus | 27.73 | 29.33 |
TraesCS2D01G418800.2 | Wheat | nucleus | 32.35 | 28.41 |
TraesCS2A01G422400.2 | Wheat | nucleus | 32.35 | 28.31 |
HORVU2Hr1G098930.3 | Barley | nucleus | 32.77 | 28.26 |
Solyc02g084630.2.1 | Tomato | nucleus | 26.47 | 28.0 |
Solyc04g081000.2.1 | Tomato | nucleus | 26.47 | 27.63 |
Zm00001d041587_P001 | Maize | nucleus | 15.13 | 26.67 |
Zm00001d033701_P001 | Maize | nucleus | 26.89 | 26.45 |
Zm00001d020114_P001 | Maize | nucleus | 24.79 | 26.22 |
TraesCS7B01G377700.1 | Wheat | nucleus | 24.79 | 26.11 |
HORVU7Hr1G108280.4 | Barley | nucleus, plastid | 28.15 | 25.09 |
HORVU7Hr1G108410.1 | Barley | nucleus | 21.85 | 23.85 |
Zm00001d031591_P001 | Maize | nucleus | 28.99 | 23.79 |
Zm00001d047742_P001 | Maize | nucleus | 29.41 | 20.53 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009987 |
GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048316 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
UniProt:K4D4C5 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF257 | SMART:SM00432 | SUPFAM:SSF55455 |
EnsemblPlantsGene:Solyc11g005120.1 | EnsemblPlants:Solyc11g005120.1.1 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | InterPro:TT16-like |
UniParc:UPI0002769796 | : | : | : | : | : |
Description
Protein TRANSPARENT TESTA 16 [Source:Projected from Arabidopsis thaliana (AT5G23260) UniProtKB/Swiss-Prot;Acc:Q8RYD9]
Coordinates
chr11:-:107329..109329
Molecular Weight (calculated)
27793.3 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.785
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST KGKLFEYTTQ PHSMGEIINK YLQTTGASLP IHDHRVEQYD EITKMKRETL
101: NLELSLQRYK GDELNSAQYD ELNELEKQLE NSINKIRARK LELLQQQMEN LKRTEKMLEK ENHDMCQWLM KYEMYKQQPV AMMEQQEEAA ITELNLLGEQ
201: PLLSQFSFFG DQHQLGTTSN SSAYHLQTSH PFTPSTYD
101: NLELSLQRYK GDELNSAQYD ELNELEKQLE NSINKIRARK LELLQQQMEN LKRTEKMLEK ENHDMCQWLM KYEMYKQQPV AMMEQQEEAA ITELNLLGEQ
201: PLLSQFSFFG DQHQLGTTSN SSAYHLQTSH PFTPSTYD
001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND
Arabidopsis Description
TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.