Factsheet for Os02t0170300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G147400.1	Wheat	nucleus	80.38	82.94
TraesCS6A01G158100.1	Wheat	nucleus	80.38	82.94
TraesCS6B01G186700.1	Wheat	nucleus	80.38	82.61
HORVU6Hr1G032220.7	Barley	nucleus	80.0	80.0
Zm00001d015381_P001	Maize	nucleus	77.31	77.31
EES06346	Sorghum	nucleus	74.23	74.81
GSMUA_Achr3P23580_001	Banana	nucleus	60.0	64.73
GSMUA_Achr2P02660_001	Banana	nucleus	58.85	63.75
VIT_10s0042g00820.t01	Wine grape	nucleus	45.38	50.0
Os04t0614100-00	Rice	nucleus	33.85	49.44
VIT_01s0011g01560.t01	Wine grape	nucleus	41.15	47.77
Os06t0667200-01	Rice	nucleus	38.08	44.8
Bra013028.1-P	Field mustard	nucleus	38.46	41.67
CDY02217	Canola	nucleus	38.46	41.67
CDY45758	Canola	nucleus	38.46	41.32
KRG89112	Soybean	nucleus	38.85	41.22
Os01t0883100-01	Rice	nucleus	33.08	41.15
KRH40895	Soybean	nucleus	38.46	40.98
VIT_02s0025g02350.t01	Wine grape	nucleus	31.92	40.29
CDX87180	Canola	nucleus	36.92	39.18
Solyc11g005120.1.1	Tomato	nucleus	35.77	39.08
Os05t0423400-01	Rice	nucleus	31.54	38.14
CDY69354	Canola	nucleus	34.23	36.78
CDY40800	Canola	nucleus	34.23	36.78
Bra029365.1-P	Field mustard	nucleus	34.23	36.78
AT5G23260.4	Thale cress	nucleus	36.54	35.45
Os06t0712700-01	Rice	nucleus	29.62	34.38
Os01t0726400-01	Rice	nucleus	25.38	33.67
CDY16841	Canola	nucleus	38.08	31.13
Bra026507.1-P	Field mustard	nucleus	37.31	30.99

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4328443	EMBL:AK109522	EMBL:AY177697	ProteinID:BAD25186.1
ProteinID:BAD25488.1	ProteinID:BAF07942.1	ProteinID:BAS77197.1	ncoils:Coil	ProteinID:EEE56400.1	GO:GO:0000003
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005975
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0019252	GO:GO:0043068
GO:GO:0045944	GO:GO:0046983	GO:GO:0048316	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os02g0170300	EnsemblPlants:Os02t0170300-01	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF259	UniProt:Q6H711
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00003B43A3
RefSeq:XP_015624837.1	SEG:seg	:	:	:	:

Description

MADS BOX GENE 29MADS box transcription factor, Regulator of early seed development (Os02t0170300-01)

Coordinates

chr2:-:3833130..3837135

Molecular Weight (calculated)

28995.6 Da

IEP (calculated)

6.851

GRAVY (calculated)

-0.393

Length

260 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP TCSLRELIEH YQTVTNTHFE EINHDQQIFV EMTRMRNEME
101: KLDGGIRRFT GDDLSNLTLA DINDLEQQLE FSVTKVRARK HQLLNQQLDN LRRKEHILED QNSFLCRMIN ENHHQAAVGG GDVKAMVEMA PVLSMLTAAP
201: AYYGEESSST ALQLTPPLHA VDAAAAAGFR LQPTQPNLQD PGCSSSSFHA AAAGHGLQLW

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.