Factsheet for VIT_10s0042g00820.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g01560.t01	Wine grape	nucleus	59.32	62.5
Bra013028.1-P	Field mustard	nucleus	57.63	56.67
CDY02217	Canola	nucleus	57.63	56.67
CDY45758	Canola	nucleus	58.05	56.61
KRG89112	Soybean	nucleus	56.36	54.29
KRH40895	Soybean	nucleus	55.93	54.1
VIT_02s0025g02350.t01	Wine grape	nucleus	46.61	53.4
CDY40800	Canola	nucleus	53.81	52.48
GSMUA_Achr3P23580_001	Banana	nucleus	52.97	51.87
Bra029365.1-P	Field mustard	nucleus	52.97	51.65
CDY69354	Canola	nucleus	52.97	51.65
Solyc11g005120.1.1	Tomato	nucleus	50.42	50.0
CDX87180	Canola	nucleus	51.69	49.8
GSMUA_Achr2P02660_001	Banana	nucleus	50.42	49.58
AT5G23260.4	Thale cress	nucleus	55.51	48.88
Os04t0614100-00	Rice	nucleus	35.59	47.19
Zm00001d015381_P001	Maize	nucleus	51.27	46.54
EES06346	Sorghum	nucleus	50.0	45.74
Os02t0170300-01	Rice	nucleus	50.0	45.38
TraesCS6D01G147400.1	Wheat	nucleus	48.31	45.24
TraesCS6A01G158100.1	Wheat	nucleus	48.31	45.24
TraesCS6B01G186700.1	Wheat	nucleus	48.31	45.06
Zm00001d018587_P001	Maize	nucleus	32.2	44.97
HORVU6Hr1G032220.7	Barley	nucleus	48.31	43.85
TraesCS2B01G440900.1	Wheat	nucleus	44.07	41.11
OQU82318	Sorghum	nucleus	43.64	40.08
CDY16841	Canola	nucleus	52.97	39.31
Zm00001d018767_P001	Maize	nucleus	42.37	39.22
Bra026507.1-P	Field mustard	nucleus	51.69	38.98
Os06t0667200-01	Rice	nucleus	36.44	38.91
Zm00001d003168_P001	Maize	nucleus	39.41	38.59
VIT_18s0001g01760.t01	Wine grape	nucleus	34.32	38.21
TraesCS2D01G418800.2	Wheat	nucleus	43.64	38.01
TraesCS2A01G422400.2	Wheat	nucleus	43.64	37.87
HORVU2Hr1G098930.3	Barley	nucleus	43.64	37.32
KXG20558	Sorghum	nucleus	35.59	35.15
TraesCS1D01G441200.1	Wheat	nucleus	27.97	34.74
TraesCS3D01G090300.1	Wheat	nucleus	32.2	34.7
TraesCS7A01G475000.1	Wheat	nucleus	33.05	34.67
TraesCS3A01G090900.1	Wheat	nucleus	32.63	33.92
TraesCS3A01G090300.1	Wheat	nucleus	32.2	33.78
TraesCS3B01G105700.2	Wheat	nucleus	32.2	33.48
TraesCS3D01G102700.1	Wheat	nucleus	31.78	32.75
Zm00001d041587_P001	Maize	nucleus	18.64	32.59
VIT_18s0001g13460.t01	Wine grape	nucleus	30.93	32.3
Zm00001d033701_P001	Maize	nucleus	32.63	31.82
TraesCS7B01G377700.1	Wheat	nucleus	29.24	30.53
Zm00001d020114_P001	Maize	nucleus	28.81	30.22
HORVU7Hr1G108280.4	Barley	nucleus, plastid	32.2	28.46
HORVU7Hr1G108410.1	Barley	nucleus	25.85	27.98
Zm00001d031591_P001	Maize	nucleus	34.32	27.93
Zm00001d047742_P001	Maize	nucleus	35.59	24.63
VIT_04s0023g02820.t01	Wine grape	nucleus	31.78	24.51

Protein Annotations

EntrezGene:100244209	wikigene:100244209	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CCB52108	ProteinID:CCB52108.1
ncoils:Coil	UniProt:F6HIR2	EMBL:FN595766	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	GO:GO:0048316	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
EntrezGene:LOC100244209	wikigene:LOC100244209	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF257	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	InterPro:TT16-like	UniParc:UPI00021084D2
ArrayExpress:VIT_10s0042g00820	EnsemblPlantsGene:VIT_10s0042g00820	EnsemblPlants:VIT_10s0042g00820.t01	RefSeq:XP_002271905	RefSeq:XP_002271905.2	RefSeq:XP_010655915.1
RefSeq:XP_010655916.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:14127878..14133902

Molecular Weight (calculated)

27817.2 Da

IEP (calculated)

7.715

GRAVY (calculated)

-0.871

Length

236 amino acids

Sequence
(BLAST)

001: MGRGKIAIRR IENQTSRQVT FSKRRAGLLK KTHELSVLCD VQIGLIIFSS TGKMCEYCTE PWRMDQIIER YQKVTGTRIP EHDSREQIYN ELTRMRKETS
101: RLQRSMRGYT GEDLSSIPYE DLDQLEQQLE HSADKVRARK NQLLQQQLDN LRRKEQMLEE ENSKMYHWIK ENRAALDYQQ AAIEVKPVEH HHQMLDQFPF
201: FGEEGPNSVL QLSTIHPQLH PYGLQLTQPH LQDSSI

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.