Factsheet for Zm00001d033701_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018587_P001	Maize	nucleus	55.79	79.88
Os04t0614100-00	Rice	nucleus	50.0	67.98
Zm00001d018767_P001	Maize	nucleus	61.57	58.43
OQU82318	Sorghum	nucleus	61.57	57.98
Zm00001d003168_P001	Maize	nucleus	56.61	56.85
TraesCS2B01G440900.1	Wheat	nucleus	52.48	50.2
Zm00001d031591_P001	Maize	nucleus	55.79	46.55
TraesCS2D01G418800.2	Wheat	nucleus	52.07	46.49
TraesCS2A01G422400.2	Wheat	nucleus	51.65	45.96
HORVU2Hr1G098930.3	Barley	nucleus	51.65	45.29
Zm00001d047742_P001	Maize	nucleus	59.92	42.52
Zm00001d020114_P001	Maize	nucleus	38.43	41.33
GSMUA_Achr2P02660_001	Banana	nucleus	35.54	35.83
GSMUA_Achr3P23580_001	Banana	nucleus	35.12	35.27
VIT_02s0025g02350.t01	Wine grape	nucleus	28.1	33.01
VIT_10s0042g00820.t01	Wine grape	nucleus	31.82	32.63
Zm00001d041587_P001	Maize	nucleus	17.36	31.11
Zm00001d015381_P001	Maize	nucleus	32.64	30.38
VIT_01s0011g01560.t01	Wine grape	nucleus	28.1	30.36
Bra013028.1-P	Field mustard	nucleus	29.75	30.0
CDY02217	Canola	nucleus	29.75	30.0
CDY45758	Canola	nucleus	29.34	29.34
Zm00001d036425_P002	Maize	nucleus	27.27	29.07
CDX87180	Canola	nucleus	28.93	28.57
CDY40800	Canola	nucleus	28.1	28.1
Bra029365.1-P	Field mustard	nucleus	28.1	28.1
CDY69354	Canola	nucleus	28.1	28.1
Solyc11g005120.1.1	Tomato	nucleus	26.45	26.89
KRH40895	Soybean	nucleus	26.45	26.23
AT5G23260.4	Thale cress	nucleus	28.93	26.12
KRG89112	Soybean	nucleus	26.03	25.71
Zm00001d011748_P001	Maize	nucleus	20.66	25.38
Zm00001d010232_P001	Maize	nucleus	21.07	24.06
Zm00001d042618_P001	Maize	nucleus	21.9	23.56
CDY16841	Canola	nucleus	29.34	22.33
Bra026507.1-P	Field mustard	nucleus	28.1	21.73
Zm00001d010233_P004	Maize	nucleus	20.66	19.53
Zm00001d043589_P002	Maize	plastid	21.07	18.55

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6L1N3	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	ProteinID:ONM08438.1	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF210	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000221F23E	EnsemblPlantsGene:Zm00001d033701
EnsemblPlants:Zm00001d033701_P001	EnsemblPlants:Zm00001d033701_T001	:	:	:	:

Description

Protein TRANSPARENT TESTA 16

Coordinates

chr1:+:271558004..271559826

Molecular Weight (calculated)

27350.0 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.411

Length

242 amino acids

Sequence
(BLAST)

001: MGRGKVELKK IENPTNRQVT FSKRRMGLFK KSNELAILCD AQIRVIIFSG SGRMYEYSNP PWRIASVFDR YLKAPSTHFE EMDIQDERNR LRMIMAQYMA
101: EDLASFSVQD LSNLEQQIEF SLYKVRLRKH ELLDQQLLEI HQRVRRRCTG TGSSHGSPTC SRTPTSMAGC GKLPPPVPGH SFAVDCCGRG VRSQISTLTD
201: DGDGVDACRF ALVVGVRPQQ DDAERAALFI LESLIMSHEL PP

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.