Factsheet for GSMUA_Achr3P23580_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P02660_001	Banana	nucleus	78.84	79.17
Os02t0170300-01	Rice	nucleus	64.73	60.0
EES06346	Sorghum	nucleus	62.66	58.53
Zm00001d015381_P001	Maize	nucleus	63.07	58.46
TraesCS6B01G186700.1	Wheat	nucleus	60.58	57.71
TraesCS6A01G158100.1	Wheat	nucleus	60.17	57.54
TraesCS6D01G147400.1	Wheat	nucleus	60.17	57.54
HORVU6Hr1G032220.7	Barley	nucleus	60.58	56.15
Os04t0614100-00	Rice	nucleus	39.42	53.37
VIT_10s0042g00820.t01	Wine grape	nucleus	51.87	52.97
GSMUA_Achr9P20940_001	Banana	nucleus	21.99	51.96
VIT_01s0011g01560.t01	Wine grape	nucleus	47.3	50.89
Zm00001d018587_P001	Maize	nucleus	35.68	50.89
Bra013028.1-P	Field mustard	nucleus	47.72	47.92
CDY02217	Canola	nucleus	47.72	47.92
CDY45758	Canola	nucleus	47.72	47.52
GSMUA_Achr6P18670_001	Banana	nucleus	39.83	45.5
CDX87180	Canola	nucleus	46.06	45.31
GSMUA_Achr5P01230_001	Banana	nucleus	39.42	45.02
TraesCS2B01G440900.1	Wheat	nucleus	46.89	44.66
OQU82318	Sorghum	nucleus	46.89	43.97
Zm00001d018767_P001	Maize	nucleus	46.47	43.92
VIT_02s0025g02350.t01	Wine grape	nucleus	37.34	43.69
Zm00001d003168_P001	Maize	nucleus	43.57	43.57
CDY69354	Canola	nucleus	43.57	43.39
Bra029365.1-P	Field mustard	nucleus	43.57	43.39
CDY40800	Canola	nucleus	43.15	42.98
Solyc11g005120.1.1	Tomato	nucleus	42.32	42.86
KRH40895	Soybean	nucleus	42.74	42.21
Os06t0667200-01	Rice	nucleus	38.59	42.08
TraesCS2D01G418800.2	Wheat	nucleus	47.3	42.07
KRG89112	Soybean	nucleus	42.74	42.04
TraesCS3D01G102700.1	Wheat	nucleus	39.83	41.92
TraesCS2A01G422400.2	Wheat	nucleus	47.3	41.91
AT5G23260.4	Thale cress	nucleus	46.47	41.79
TraesCS3A01G090900.1	Wheat	nucleus	38.17	40.53
HORVU2Hr1G098930.3	Barley	nucleus	46.06	40.22
TraesCS3D01G090300.1	Wheat	nucleus	36.1	39.73
TraesCS3B01G105700.2	Wheat	nucleus	37.34	39.65
TraesCS3A01G090300.1	Wheat	nucleus	36.93	39.56
KXG20558	Sorghum	nucleus	39.0	39.33
Zm00001d041587_P001	Maize	nucleus	21.99	39.26
TraesCS1D01G441200.1	Wheat	nucleus	30.29	38.42
TraesCS7A01G475000.1	Wheat	nucleus	35.68	38.22
GSMUA_Achr9P20950_001	Banana	nucleus	35.27	37.78
TraesCS7B01G377700.1	Wheat	nucleus	34.85	37.17
Zm00001d033701_P001	Maize	nucleus	35.27	35.12
HORVU7Hr1G108410.1	Barley	nucleus	31.54	34.86
CDY16841	Canola	nucleus	45.64	34.59
Bra026507.1-P	Field mustard	nucleus	44.81	34.5
Zm00001d020114_P001	Maize	nucleus	31.95	34.22
GSMUA_Achr9P05780_001	Banana	nucleus	30.29	34.11
HORVU7Hr1G108280.4	Barley	nucleus, plastid	36.51	32.96
Zm00001d031591_P001	Maize	nucleus	36.93	30.69
Zm00001d047742_P001	Maize	nucleus	39.0	27.57

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr3G23580_001
EnsemblPlants:GSMUA_Achr3P23580_001	EnsemblPlants:GSMUA_Achr3T23580_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0SH74
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF259	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000296F676	SEG:seg	:	:

Description

MADS-box transcription factor 29 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23580_001]

Coordinates

chr3:-:24390497..24394522

Molecular Weight (calculated)

28263.9 Da

IEP (calculated)

7.189

GRAVY (calculated)

-0.654

Length

241 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENPTNRQVT FSKRRGGLLK KANELAILCD AQVGVIIFSS TGKLFEYCSP HLSMRQLIER YQRVTNTHFE EINSQQQIIC EISRMRDEND
101: KLQASMRQFT GEDLASLTLN EVNQLEEQLE YSVNKVRARK HQLLHQQLEN LRRKEHILED EHNYLCRVLA EHQAAMEHQQ VVAMEHKVGD VPMLEHFGHL
201: YAEEPSRNLL QLSPQMHAFR LQPTQPNLQE ATFQGHYLQL W

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.