Factsheet for GSMUA_Achr9P20950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P23630_001
GSMUA_Achr5P01230_001
GSMUA_Achr6P18670_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	GSMUA_Achr3P23630_001	AT1G30950.1	18287201
AT3G54340.1	GSMUA_Achr11P...	AT3G02310.1	15604664
AT3G54340.1	GSMUA_Achr5P01230_001	AT5G20240.1	15604664
AT3G54340.1	GSMUA_Achr6P18670_001	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P20940_001	Banana	nucleus	39.11	86.27
KRH61083	Soybean	nucleus	40.44	65.47
VIT_18s0001g13460.t01	Wine grape	nucleus	58.22	57.96
Solyc02g084630.2.1	Tomato	nucleus	56.89	56.89
PGSC0003DMT400009112	Potato	nucleus	56.44	56.44
KRH66520	Soybean	nucleus	32.89	56.06
KRH25650	Soybean	nucleus	32.89	56.06
KRH07712	Soybean	nucleus	32.44	55.3
CDY69833	Canola	nucleus	42.67	54.24
KRH51760	Soybean	nucleus	53.78	53.3
PGSC0003DMT400009510	Potato	nucleus	52.89	52.19
Solyc04g081000.2.1	Tomato	nucleus	52.0	51.32
Bra014822.1-P	Field mustard	nucleus	49.33	49.55
KRH28746	Soybean	nucleus	51.11	49.15
CDY13200	Canola	nucleus	48.89	49.11
CDX76152	Canola	nucleus	48.89	49.11
KRH76708	Soybean	nucleus	52.0	48.15
CDX73487	Canola	nucleus	49.33	47.84
Bra007067.1-P	Field mustard	nucleus	48.89	47.41
AT3G54340.1	Thale cress	nucleus	48.89	47.41
VIT_04s0023g02820.t01	Wine grape	nucleus	63.11	46.41
GSMUA_Achr6P18670_001	Banana	nucleus	38.67	41.23
GSMUA_Achr5P01230_001	Banana	nucleus	38.67	41.23
GSMUA_Achr2P02660_001	Banana	nucleus	38.22	35.83
GSMUA_Achr3P23580_001	Banana	nucleus	37.78	35.27
GSMUA_Achr9P05780_001	Banana	nucleus	31.11	32.71

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr9G20950_001
EnsemblPlants:GSMUA_Achr9P20950_001	EnsemblPlants:GSMUA_Achr9T20950_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0U254
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF251	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002967BCA	:	:	:

Description

MADS-box transcription factor 16 [Source:GMGC_GENE;Acc:GSMUA_Achr9G20950_001]

Coordinates

chr9:+:25424787..25431012

Molecular Weight (calculated)

26094.1 Da

IEP (calculated)

9.816

GRAVY (calculated)

-0.915

Length

225 amino acids

Sequence
(BLAST)

001: MGRGKIEIKK IENPTNRQVT YSKRRTGIMK KAKELTVLCD AEVSIIMFSS TGKFSEYCSP STDTKKIFDR YQQVSGTNLW SAQYERMQNN LNHLKQINRN
101: LRREIRQRMG EGLDGKDIEE LRGLEQNLDE ALKVVRNRKY HVISTQTDTY KKKLKNSQEA HRNLLHELEM RDDHPVYGFI EDEPTSYEGA LALANGGAHM
201: YSFRVQPSQP NLHGMRYGSH DLRLG

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.