CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88846
CDX92479
CDY12448
CDY34718
CDY35823
CDY43239
CDY45099
CDY52183
CDY57524
CDY60377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	CDY12448	AT1G30950.1	18287201
AT3G54340.1	CDY52183	AT1G30950.1	18287201
AT3G54340.1	CDY34718	AT3G02310.1	15604664
AT3G54340.1	CDY43239	AT3G02310.1	15604664
AT3G54340.1	CDY57524	AT3G02310.1	15604664
AT3G54340.1	CDX88846	AT5G20240.1	15604664
AT3G54340.1	CDX92479	AT5G20240.1	15604664
AT3G54340.1	CDY35823	AT5G20240.1	15604664
AT3G54340.1	CDY45099	AT5G20240.1	15604664
AT3G54340.1	CDY60377	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014822.1-P	Field mustard	nucleus	99.55	99.55
CDY13200	Canola	nucleus	98.66	98.66
CDX73487	Canola	nucleus	98.21	94.83
AT3G54340.1	Thale cress	nucleus	95.09	91.81
CDY69833	Canola	nucleus	69.64	88.14
KRH61083	Soybean	nucleus	42.86	69.06
GSMUA_Achr9P20940_001	Banana	nucleus	27.23	59.8
KRH66520	Soybean	nucleus	34.82	59.09
KRH25650	Soybean	nucleus	34.82	59.09
KRH07712	Soybean	nucleus	34.82	59.09
VIT_18s0001g13460.t01	Wine grape	nucleus	59.38	58.85
Solyc04g081000.2.1	Tomato	nucleus	59.82	58.77
PGSC0003DMT400009510	Potato	nucleus	58.93	57.89
KRH51760	Soybean	nucleus	54.46	53.74
GSMUA_Achr9P20950_001	Banana	nucleus	49.11	48.89
TraesCS7B01G286600.2	Wheat	nucleus	49.55	48.47
TraesCS7D01G380300.1	Wheat	nucleus	49.11	48.46
EER90370	Sorghum	nucleus	48.66	48.23
Os06t0712700-01	Rice	nucleus	47.77	47.77
Zm00001d036425_P002	Maize	nucleus	48.21	47.58
TraesCS7A01G383800.1	Wheat	nucleus	49.55	46.84
TraesCS6B01G159400.1	Wheat	nucleus	42.41	41.13
TraesCS6D01G120900.1	Wheat	nucleus	42.86	40.17
TraesCS6A01G131100.1	Wheat	nucleus	41.52	38.91
HORVU7Hr1G091210.4	Barley	nucleus, plastid	39.73	37.4
CDY35823	Canola	nucleus	25.45	37.01
CDX92479	Canola	nucleus	25.0	36.36
CDX88846	Canola	nucleus	27.68	30.54
CDY60377	Canola	nucleus	27.68	30.54
CDY45099	Canola	nucleus	26.79	29.56
CDY45758	Canola	nucleus	29.91	27.69
CDY02217	Canola	nucleus	29.46	27.5
CDY69354	Canola	nucleus	28.57	26.45
CDY40800	Canola	nucleus	28.12	26.03
CDX87180	Canola	nucleus	28.12	25.71
CDY16841	Canola	nucleus	29.02	20.44

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlants:CDX76152	ProteinID:CDX76152	ProteinID:CDX76152.1	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00126445001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF219	GO:Q9M7M0	UniProt:Q9M7M0	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A60C2	SEG:seg

Description

BnaA04g04160DAPETALA3 [Source:UniProtKB/TrEMBL;Acc:Q9M7M0]

Coordinates

chrLK031806:+:1415191..1417172

Molecular Weight (calculated)

26380.3 Da

IEP (calculated)

8.659

GRAVY (calculated)

-0.839

Length

224 amino acids

Sequence
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEFISP NTTTKEIIDL YQTVSDVDVW SAHYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRSLEEEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQLRFHQNH
201: HHHYPNHALH AASASDIITF HLLE

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.