Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88846 | Canola | nucleus | 100.0 | 100.0 |
| CDY45099 | Canola | nucleus | 96.06 | 96.06 |
| Bra006549.1-P | Field mustard | nucleus | 95.57 | 93.27 |
| AT5G20240.1 | Thale cress | nucleus | 95.57 | 93.27 |
| CDY35823 | Canola | nucleus | 65.02 | 85.71 |
| CDX92479 | Canola | nucleus | 64.04 | 84.42 |
| KRH64611 | Soybean | nucleus | 54.68 | 61.33 |
| KRH53304 | Soybean | nucleus | 54.19 | 60.77 |
| KRH16433 | Soybean | nucleus | 61.08 | 59.62 |
| KRH18034 | Soybean | nucleus | 60.59 | 59.13 |
| Solyc06g059970.2.1 | Tomato | nucleus | 62.07 | 58.88 |
| VIT_18s0001g01760.t01 | Wine grape | nucleus | 61.08 | 58.49 |
| GSMUA_Achr5P01230_001 | Banana | nucleus | 55.66 | 53.55 |
| GSMUA_Achr6P18670_001 | Banana | nucleus | 55.17 | 53.08 |
| TraesCS3D01G401700.1 | Wheat | nucleus | 54.19 | 52.63 |
| TraesCS3A01G406500.2 | Wheat | nucleus | 54.19 | 52.63 |
| EES01864 | Sorghum | nucleus | 54.19 | 52.63 |
| Os01t0883100-01 | Rice | nucleus | 54.19 | 52.63 |
| PGSC0003DMT400019070 | Potato | nucleus | 54.19 | 52.38 |
| TraesCS1B01G275000.1 | Wheat | nucleus | 53.2 | 51.92 |
| TraesCS1A01G264300.1 | Wheat | nucleus | 53.2 | 51.92 |
| EES18254 | Sorghum | nucleus | 54.19 | 51.89 |
| TraesCS3B01G440200.3 | Wheat | nucleus | 54.19 | 51.4 |
| Zm00001d010232_P001 | Maize | nucleus | 53.2 | 50.94 |
| Os05t0423400-01 | Rice | nucleus | 53.2 | 50.23 |
| Zm00001d042618_P001 | Maize | nucleus | 54.68 | 49.33 |
| HORVU1Hr1G063620.1 | Barley | nucleus | 53.2 | 48.43 |
| TraesCS1D01G264500.1 | Wheat | nucleus | 46.8 | 43.58 |
| Zm00001d010233_P004 | Maize | nucleus | 52.22 | 41.41 |
| HORVU3Hr1G091000.8 | Barley | nucleus, plastid | 54.19 | 40.29 |
| PGSC0003DMT400019069 | Potato | cytosol | 9.85 | 33.33 |
| CDY45758 | Canola | nucleus | 38.92 | 32.64 |
| CDY02217 | Canola | nucleus | 38.42 | 32.5 |
| CDX87180 | Canola | nucleus | 38.42 | 31.84 |
| CDY69833 | Canola | nucleus | 27.59 | 31.64 |
| CDY40800 | Canola | nucleus | 36.95 | 30.99 |
| CDY69354 | Canola | nucleus | 35.96 | 30.17 |
| CDY13200 | Canola | nucleus | 31.03 | 28.12 |
| CDX76152 | Canola | nucleus | 30.54 | 27.68 |
| CDX73487 | Canola | nucleus | 30.54 | 26.72 |
| CDY16841 | Canola | nucleus | 38.92 | 24.84 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DHV7 | UniProt:A0A078DHV7 | EnsemblPlants:CDY60377 | ProteinID:CDY60377 |
| ProteinID:CDY60377.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00028543001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF354 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDDDEE | : |
Description
BnaCnng36180DBnaA03g08030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DHV7]
Coordinates
chrLK033874:-:21187..23395
Molecular Weight (calculated)
23449.7 Da
IEP (calculated)
9.409
GRAVY (calculated)
-0.626
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIVFAS NGKMTDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDN
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKMEYLMT KRRNEKMLAE ENRQLSFQLQ QQEMAIASNA RGMMMRDHDG QFGYRVQPIQ PNLQEKIMSL
201: VID
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKMEYLMT KRRNEKMLAE ENRQLSFQLQ QQEMAIASNA RGMMMRDHDG QFGYRVQPIQ PNLQEKIMSL
201: VID
001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
Arabidopsis Description
PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.