Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G406500.2 | Wheat | nucleus | 97.2 | 99.52 |
| TraesCS3D01G401700.1 | Wheat | nucleus | 96.73 | 99.04 |
| Os01t0883100-01 | Rice | nucleus | 85.98 | 88.04 |
| EES01864 | Sorghum | nucleus | 85.05 | 87.08 |
| Zm00001d042618_P001 | Maize | nucleus | 85.98 | 81.78 |
| TraesCS1B01G275000.1 | Wheat | nucleus | 73.83 | 75.96 |
| HORVU3Hr1G091000.8 | Barley | nucleus, plastid | 96.73 | 75.82 |
| GSMUA_Achr5P01230_001 | Banana | nucleus | 62.15 | 63.03 |
| GSMUA_Achr6P18670_001 | Banana | nucleus | 61.68 | 62.56 |
| Bra002285.1-P | Field mustard | nucleus | 41.12 | 60.27 |
| KRH64611 | Soybean | nucleus | 50.47 | 59.67 |
| KRH53304 | Soybean | nucleus | 50.0 | 59.12 |
| VIT_18s0001g01760.t01 | Wine grape | nucleus | 57.94 | 58.49 |
| KRH16433 | Soybean | nucleus | 56.54 | 58.17 |
| KRH18034 | Soybean | nucleus | 56.54 | 58.17 |
| Solyc06g059970.2.1 | Tomato | nucleus | 55.61 | 55.61 |
| CDY35823 | Canola | nucleus | 39.72 | 55.19 |
| CDX88846 | Canola | nucleus | 51.4 | 54.19 |
| CDY60377 | Canola | nucleus | 51.4 | 54.19 |
| CDX92479 | Canola | nucleus | 38.78 | 53.9 |
| CDY45099 | Canola | nucleus | 50.93 | 53.69 |
| Bra020093.1-P | Field mustard | nucleus | 50.47 | 53.2 |
| Solyc08g067230.2.1 | Tomato | nucleus | 51.4 | 52.38 |
| Bra006549.1-P | Field mustard | nucleus | 50.47 | 51.92 |
| AT5G20240.1 | Thale cress | nucleus | 49.53 | 50.96 |
| PGSC0003DMT400019070 | Potato | nucleus | 50.0 | 50.95 |
| TraesCS7B01G286600.2 | Wheat | nucleus | 38.32 | 35.81 |
| PGSC0003DMT400019069 | Potato | cytosol | 8.88 | 31.67 |
| TraesCS6B01G186700.1 | Wheat | nucleus | 36.45 | 30.83 |
| TraesCS6B01G159400.1 | Wheat | nucleus | 32.24 | 29.87 |
| TraesCS3B01G318300.1 | Wheat | cytosol | 26.17 | 28.57 |
| TraesCS3B01G105700.2 | Wheat | nucleus | 29.91 | 28.19 |
| TraesCS7B01G377700.1 | Wheat | nucleus | 27.57 | 26.11 |
| TraesCS2B01G440900.1 | Wheat | nucleus | 30.37 | 25.69 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF347 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS3B01G440200 | EnsemblPlants:TraesCS3B01G440200.3 | TIGR:cd00265 |
Description
No Description!
Coordinates
chr3B:+:679642968..679645157
Molecular Weight (calculated)
24615.6 Da
IEP (calculated)
7.692
GRAVY (calculated)
-0.653
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENQSNRQVT FSKRKNGILK KAKEISVLCD AEVGVVVFSS AGKLYDFCSP KTSCVPYLLS RILEKYQTNS GKILWDEKHK SLSAEIDRIK
101: KENDNMQIEL RHLKGEDLNS LQPKELIMIE EALDNGLTSL HEKQMEHYDR LVKHGKMLED ENKLLAFKVH QHDIALSGSM RDLELGYHPD RDFAAQMPIT
201: FRVQPSHPNL QEDS
101: KENDNMQIEL RHLKGEDLNS LQPKELIMIE EALDNGLTSL HEKQMEHYDR LVKHGKMLED ENKLLAFKVH QHDIALSGSM RDLELGYHPD RDFAAQMPIT
201: FRVQPSHPNL QEDS
001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID
Arabidopsis Description
PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.