CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93698
KRG99108
KRH01380
KRH07712
KRH18339
KRH25650
KRH42369
KRH45097
KRH45889
KRH51760
KRH52586
KRH58491
KRH61083
KRH61926
KRH66520

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20240.1	KRH52586	AT1G22920.1	21798944
AT5G20240.1	KRH61926	AT1G22920.1	21798944
AT5G20240.1	KRG99108	AT1G69690.1	21798944
AT5G20240.1	KRH45889	AT1G69690.1	21798944
AT5G20240.1	KRG93698	AT3G02310.1	15604664
AT5G20240.1	KRH01380	AT3G02310.1	15604664
AT5G20240.1	KRH18339	AT3G02310.1	15604664
AT5G20240.1	KRH45097	AT3G02310.1	15604664
AT5G20240.1	KRH07712	AT3G54340.1	15604664
AT5G20240.1	KRH25650	AT3G54340.1	15604664
AT5G20240.1	KRH51760	AT3G54340.1	15604664
AT5G20240.1	KRH61083	AT3G54340.1	15604664
AT5G20240.1	KRH66520	AT3G54340.1	15604664
AT5G20240.1	KRH42369	AT5G58230.1	23778966
AT5G20240.1	KRH58491	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16433	Soybean	nucleus	97.12	97.12
KRH64611	Soybean	nucleus	69.71	80.11
KRH53304	Soybean	nucleus	68.75	79.01
VIT_18s0001g01760.t01	Wine grape	nucleus	75.96	74.53
Bra002285.1-P	Field mustard	nucleus	47.6	67.81
PGSC0003DMT400019070	Potato	nucleus	65.38	64.76
Solyc08g067230.2.1	Tomato	nucleus	65.38	64.76
CDY35823	Canola	nucleus	46.15	62.34
CDX92479	Canola	nucleus	45.19	61.04
GSMUA_Achr5P01230_001	Banana	nucleus	61.54	60.66
CDX88846	Canola	nucleus	59.13	60.59
CDY45099	Canola	nucleus	59.13	60.59
CDY60377	Canola	nucleus	59.13	60.59
AT5G20240.1	Thale cress	nucleus	60.58	60.58
Bra020093.1-P	Field mustard	nucleus	58.65	60.1
GSMUA_Achr6P18670_001	Banana	nucleus	59.62	58.77
Bra006549.1-P	Field mustard	nucleus	58.65	58.65
EES18254	Sorghum	nucleus	59.13	58.02
TraesCS3D01G401700.1	Wheat	nucleus	58.17	57.89
TraesCS3A01G406500.2	Wheat	nucleus	58.17	57.89
Os01t0883100-01	Rice	nucleus	58.17	57.89
TraesCS1B01G275000.1	Wheat	nucleus	57.21	57.21
TraesCS1A01G264300.1	Wheat	nucleus	56.73	56.73
Zm00001d010232_P001	Maize	nucleus	57.69	56.6
TraesCS3B01G440200.3	Wheat	nucleus	58.17	56.54
EES01864	Sorghum	nucleus	56.73	56.46
Os05t0423400-01	Rice	nucleus	58.17	56.28
HORVU1Hr1G063620.1	Barley	nucleus	56.73	52.91
Zm00001d042618_P001	Maize	nucleus	56.73	52.44
KRH61083	Soybean	nucleus	32.21	48.2
TraesCS1D01G264500.1	Wheat	nucleus	50.48	48.17
Zm00001d010233_P004	Maize	nucleus	56.73	46.09
PGSC0003DMT400019069	Potato	cytosol	12.98	45.0
HORVU3Hr1G091000.8	Barley	nucleus, plastid	58.65	44.69
KRH66520	Soybean	nucleus	24.04	37.88
KRH25650	Soybean	nucleus	24.04	37.88
KRH07712	Soybean	nucleus	24.04	37.88
KRH51760	Soybean	nucleus	39.9	36.56
KRH28746	Soybean	nucleus	37.98	33.76
KRH40895	Soybean	nucleus	37.5	31.97
KRH76708	Soybean	nucleus	37.02	31.69
KRG89112	Soybean	nucleus	36.54	31.02

Protein Annotations

EntrezGene:100817554	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02008022	EMBL:BT095368	UniProt:C6TCS1
ncoils:Coil	EnsemblPlantsGene:GLYMA_13G034100	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	EnsemblPlants:KRH18034	ProteinID:KRH18034	ProteinID:KRH18034.1	ProteinID:KRH18035.1	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF97	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0001B16292	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:10667998..10673471

Molecular Weight (calculated)

24396.2 Da

IEP (calculated)

8.428

GRAVY (calculated)

-0.799

Length

208 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEITVLCD AQVSLIIFAA SGKMHDYISP STTLIDILER YHKTSGKRLW DAKHENLNGE IERLKKENDS
101: MQIELRHLKG DDINSLNYKE LMALEDALET GLVSVREKQM DVYRMLRRND KILEEENREL NFLWQQRLAE EGAREVDNGF DQSVRDYNSH MPFAFRVQPM
201: QPNLQERI

Best Arabidopsis Sequence Match ( AT5G20240.1 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE
201: KIMSLVID

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.