Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58491 | Soybean | nucleus | 99.53 | 99.53 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 93.18 | 93.4 |
| PGSC0003DMT400061016 | Potato | cytosol | 91.29 | 91.51 |
| Solyc01g104510.2.1 | Tomato | nucleus | 91.06 | 91.27 |
| AT5G58230.1 | Thale cress | nucleus | 90.12 | 90.33 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 86.59 | 87.0 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 45.41 | 86.55 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 87.06 | 86.45 |
| TraesCSU01G072700.1 | Wheat | nucleus | 86.82 | 86.22 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 86.82 | 86.22 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 87.06 | 85.85 |
| Os03t0640100-01 | Rice | cytosol | 86.12 | 85.51 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 23.53 | 85.47 |
| Zm00001d033247_P001 | Maize | nucleus | 86.59 | 85.38 |
| CDY02805 | Canola | nucleus | 79.76 | 80.91 |
| CDY43875 | Canola | nucleus | 80.71 | 80.52 |
| Zm00001d013702_P001 | Maize | nucleus | 81.65 | 80.51 |
| Bra002667.1-P | Field mustard | nucleus | 78.59 | 78.4 |
| CDY62688 | Canola | nucleus | 78.59 | 78.4 |
| Bra020379.1-P | Field mustard | cytosol | 75.06 | 76.68 |
| CDY32715 | Canola | nucleus | 75.06 | 76.68 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 74.35 | 75.24 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 86.59 | 60.53 |
| CDX88663 | Canola | nucleus | 88.47 | 59.12 |
| CDY58569 | Canola | cytosol | 88.47 | 59.12 |
| KRH24317 | Soybean | nucleus | 53.18 | 56.36 |
| KRH29002 | Soybean | nucleus | 52.0 | 54.84 |
| KRH23320 | Soybean | endoplasmic reticulum | 30.59 | 28.32 |
| KRH37388 | Soybean | nucleus | 32.71 | 27.1 |
| KRH12388 | Soybean | nucleus | 32.24 | 26.97 |
| KRH58776 | Soybean | nucleus | 26.12 | 23.47 |
| KRH21268 | Soybean | cytosol | 17.18 | 22.96 |
| KRH10009 | Soybean | cytosol, mitochondrion, nucleus | 21.18 | 22.78 |
| KRH42676 | Soybean | nucleus | 26.12 | 22.47 |
| KRH11018 | Soybean | cytosol | 15.76 | 21.75 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | EMBL:ACUP02004800 | InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_08G085900 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Histone-bd_RBBP4_N | UniProt:I1KRH4 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EnsemblPlants:KRH42369 | ProteinID:KRH42369 | ProteinID:KRH42369.1 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00023C64F5 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:6472845..6476747
Molecular Weight (calculated)
48423.6 Da
IEP (calculated)
4.522
GRAVY (calculated)
-0.549
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKEEEEMRG EIEERLINEE YKIWKKNSPF LYDLVITHAL EWPSLTVEWL PDRHEPPGKD YSLQKVILGT HTSENEPNYL MLAQVQLPLD DAENDARHYD
101: DDRPDIGGFG CANGKVQIIQ QINHEGEVNR ARYMPQNPFI IATKTVSAEV YVFDYSKHPS KPPLDGACNP DLRLRGHNTE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDING TPKNKSLEAM QIFKVHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRTP AASKPVQSVV AHQSEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKINTPL HIFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQSPEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVV ASVAEDNILQ
401: IWQMAENIYH DEDDLPEEST KAAAS
101: DDRPDIGGFG CANGKVQIIQ QINHEGEVNR ARYMPQNPFI IATKTVSAEV YVFDYSKHPS KPPLDGACNP DLRLRGHNTE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDING TPKNKSLEAM QIFKVHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRTP AASKPVQSVV AHQSEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKINTPL HIFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQSPEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVV ASVAEDNILQ
401: IWQMAENIYH DEDDLPEEST KAAAS
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.