CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37388	Soybean	nucleus	98.62	97.66
GSMUA_Achr4P08720_001	Banana	cytosol	66.54	83.05
CDY29763	Canola	endoplasmic reticulum	54.92	82.79
CDX81933	Canola	nucleus	77.17	80.99
AT2G19520.1	Thale cress	nucleus	80.51	80.67
Bra040678.1-P	Field mustard	nucleus	78.54	80.28
CDY21661	Canola	nucleus	79.53	79.84
Bra031085.1-P	Field mustard	nucleus	79.13	79.76
CDY48711	Canola	nucleus	78.94	79.72
CDY03358	Canola	nucleus	78.54	79.17
KRH23320	Soybean	endoplasmic reticulum	71.26	78.87
EES01357	Sorghum	nucleus	70.28	78.81
Bra036717.1-P	Field mustard	nucleus	74.41	78.75
Os01t0710000-01	Rice	nucleus	69.88	78.37
TraesCS3A01G250900.2	Wheat	cytosol	71.46	77.07
TraesCS3B01G280400.1	Wheat	nucleus	71.26	76.86
Zm00001d052871_P001	Maize	cytosol	4.53	76.67
TraesCS3D01G251300.2	Wheat	nucleus	71.06	76.65
CDY70287	Canola	nucleus	27.17	75.41
VIT_11s0016g02170.t01	Wine grape	nucleus	74.41	74.41
Bra011133.1-P	Field mustard	nucleus	69.09	73.74
AT4G29730.1	Thale cress	nucleus	70.47	73.51
CDY06779	Canola	nucleus	70.08	73.4
CDY43523	Canola	nucleus	68.5	73.26
CDY35867	Canola	cytosol	40.75	72.89
CDX82696	Canola	nucleus	62.8	72.5
HORVU3Hr1G066930.1	Barley	plastid	72.05	71.91
Zm00001d043683_P001	Maize	cytosol	28.74	70.87
Solyc07g039330.2.1	Tomato	nucleus	52.56	70.82
Zm00001d011705_P002	Maize	cytosol	68.9	67.31
GSMUA_Achr3P32330_001	Banana	cytosol	23.43	66.11
Zm00001d043682_P002	Maize	cytosol, plastid	68.7	65.97
KRH10009	Soybean	cytosol, mitochondrion, nucleus	51.18	65.82
GSMUA_Achr7P24160_001	Banana	nucleus	29.92	63.33
GSMUA_Achr7P09120_001	Banana	nucleus	54.92	61.32
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	26.77	59.13
Zm00001d050047_P001	Maize	nucleus	21.46	39.49
KRH58491	Soybean	nucleus	26.97	32.24
KRH42369	Soybean	nucleus	26.97	32.24
KRH29002	Soybean	nucleus	25.2	31.76
KRH24317	Soybean	nucleus	24.8	31.42
KRH58776	Soybean	nucleus	22.05	23.68
KRH42676	Soybean	nucleus	21.65	22.27
KRH21268	Soybean	cytosol	13.78	22.01
KRH11018	Soybean	cytosol	12.6	20.78

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02009311	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G169800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Histone-bd_RBBP4_N	UniProt:I1MH75	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH12388
ProteinID:KRH12388	ProteinID:KRH12388.1	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233ABA3	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:15236453..15244334

Molecular Weight (calculated)

56543.1 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.659

Length

508 amino acids

Sequence
(BLAST)

001: METPPPQQGV VKKKETRGRK PKPKDEHAKA LKEGRKTQQQ QHDQQQQQQQ QHQPSVDEKY TQWKSLVPVL YDWLANHNLV WPSLSCRWGP QLEQATYKNR
101: QRLYLSEQTD GSVPNTLVIA NCEVVKPRVA AAEHISQFNE EARSPFVKKY KTIIHPGEVN RIRELPQNSK IVATHTDSPD VLVWDVESQP NRHAVLGATN
201: SRPDLILTGH QDNAEFALAM CPTEPYVLSG GKDKTVVLWS IEDHITSAAT DSKSGGSIIK QNSKSGEGND KTADGPTVGP RGIYCGHEDT VEDVTFCPSS
301: AQEFCSVGDD SCLILWDARV GSSPVVKVEK AHNADLHCVD WNPHDDNLIL TGSADNSVRM FDRRNLTTNG VGSPIHKFEG HKAAVLCVQW SPDKSSVFGS
401: SAEDGLLNIW DYEKVGKKIE RTGKSISSPP GLFFQHAGHR DKVVDFHWNA YDPWTIVSVS DDCESTGGGG TLQIWRMSDL IYRPEDEVLA ELEKFKSHVV
501: ACASKTEK

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.