Factsheet for TraesCS3D01G251300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G280400.1	Wheat	nucleus	99.79	99.79
TraesCS3A01G250900.2	Wheat	cytosol	99.15	99.15
Os01t0710000-01	Rice	nucleus	88.53	92.05
EES01357	Sorghum	nucleus	88.53	92.05
HORVU3Hr1G066930.1	Barley	plastid	95.33	88.21
VIT_09s0002g02150.t01	Wine grape	nucleus	75.8	78.81
GSMUA_Achr4P08720_001	Banana	cytosol	67.94	78.62
Zm00001d011705_P002	Maize	cytosol	86.62	78.46
Zm00001d043683_P001	Maize	cytosol	34.18	78.16
PGSC0003DMT400006393	Potato	nucleus	57.32	78.03
Solyc03g121580.2.1	Tomato	nucleus	75.37	77.17
Zm00001d043682_P002	Maize	cytosol, plastid	85.99	76.56
CDY29763	Canola	endoplasmic reticulum	54.35	75.96
KRH23320	Soybean	endoplasmic reticulum	71.34	73.2
CDX81933	Canola	nucleus	74.95	72.93
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	35.46	72.61
Bra040678.1-P	Field mustard	nucleus	75.16	71.23
KRH12388	Soybean	nucleus	76.65	71.06
KRH37388	Soybean	nucleus	76.65	70.37
AT2G19520.1	Thale cress	nucleus	75.58	70.22
CDY48711	Canola	nucleus	74.95	70.18
Bra031085.1-P	Field mustard	nucleus	74.73	69.84
CDY21661	Canola	nucleus	74.95	69.76
CDY03358	Canola	nucleus	74.52	69.64
Bra036717.1-P	Field mustard	nucleus	70.49	69.17
VIT_11s0016g02170.t01	Wine grape	nucleus	73.25	67.91
GSMUA_Achr3P32330_001	Banana	cytosol	25.69	67.22
CDY43523	Canola	nucleus	66.88	66.32
Bra011133.1-P	Field mustard	nucleus	66.67	65.97
Solyc07g039330.2.1	Tomato	nucleus	52.65	65.78
CDY06779	Canola	nucleus	67.73	65.77
CDY70287	Canola	nucleus	25.48	65.57
AT4G29730.1	Thale cress	nucleus	67.52	65.3
CDY35867	Canola	cytosol	39.07	64.79
CDX82696	Canola	nucleus	59.45	63.64
GSMUA_Achr7P24160_001	Banana	nucleus	31.42	61.67
KRH10009	Soybean	cytosol, mitochondrion, nucleus	51.38	61.27
GSMUA_Achr7P09120_001	Banana	nucleus	56.05	58.02
Zm00001d050047_P001	Maize	nucleus	26.96	46.01
TraesCS5D01G385800.1	Wheat	cytosol	15.71	33.18
TraesCS5D01G385600.1	Wheat	nucleus	29.3	32.24
TraesCS5D01G337800.1	Wheat	cytosol	25.27	29.46
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	23.57	23.03
TraesCS3D01G373900.1	Wheat	cytosol	14.65	21.77

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Histone-bd_RBBP4_N
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF85	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS3D01G251300
EnsemblPlants:TraesCS3D01G251300.2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr3D:-:352110457..352117379

Molecular Weight (calculated)

52029.5 Da

IEP (calculated)

5.979

GRAVY (calculated)

-0.547

Length

471 amino acids

Sequence
(BLAST)

001: MKERGGSRAA VDERYAQWKS LIPVLYDWFA NHNLVWPSLS CRWGPQFEQA TYKNRQRLYL SEQTDGSVPN TMVIANCEVV KPRVAAAEHI SQFNEEARSP
101: FVKKYKTIIH PGEVNRIREL PQNSRIIATH TDSPDVLIWD VEAQPNRHAV LGATDSRPDL DVNGMDSDNI PNIPDLILRG HQENAEFALA MCPAEPYVLS
201: GGKDKSVVWW SIQDHISGLG DSSKSETSPG ASGSKHSKTA NEKDSPKVDP RGVFHGHDST VEDVQFCPSS AQEFCSVGDD ACLILWDART GTSPAVKVEK
301: AHGGDVHCVD WNLHDVNYIL TGSADNSVRM WDRRNLGPGG AGSPIHKFEG HKAAVLCVQW SPDKASVFGS SAEDGFLNVW DHEKVGKKKN PNSPGGLFFQ
401: HAGHRDKIVD FHWNSSDPWT IVSVSDDGES TGGGGTLQIW RMSDLIYRPE DEVVSELETF KSHLASCTPR A

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.