Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P08720_001 | Banana | cytosol | 73.33 | 43.24 |
| CDY35867 | Canola | cytosol | 50.83 | 42.96 |
| CDY29763 | Canola | endoplasmic reticulum | 54.17 | 38.58 |
| Solyc07g039330.2.1 | Tomato | nucleus | 56.25 | 35.81 |
| EES01357 | Sorghum | nucleus | 60.83 | 32.23 |
| KRH23320 | Soybean | endoplasmic reticulum | 60.83 | 31.81 |
| PGSC0003DMT400006393 | Potato | nucleus | 45.42 | 31.5 |
| TraesCS3D01G251300.2 | Wheat | nucleus | 61.67 | 31.42 |
| TraesCS3B01G280400.1 | Wheat | nucleus | 61.67 | 31.42 |
| TraesCS3A01G250900.2 | Wheat | cytosol | 61.25 | 31.21 |
| Os01t0710000-01 | Rice | nucleus | 58.75 | 31.13 |
| VIT_09s0002g02150.t01 | Wine grape | nucleus | 58.33 | 30.91 |
| VIT_11s0016g02170.t01 | Wine grape | nucleus | 63.75 | 30.12 |
| Solyc03g121580.2.1 | Tomato | nucleus | 57.5 | 30.0 |
| KRH12388 | Soybean | nucleus | 63.33 | 29.92 |
| KRH37388 | Soybean | nucleus | 63.33 | 29.63 |
| Bra036717.1-P | Field mustard | nucleus | 58.75 | 29.38 |
| CDX81933 | Canola | nucleus | 58.75 | 29.13 |
| HORVU3Hr1G066930.1 | Barley | plastid | 61.67 | 29.08 |
| CDY06779 | Canola | nucleus | 58.75 | 29.07 |
| CDY43523 | Canola | nucleus | 56.25 | 28.42 |
| Bra011133.1-P | Field mustard | nucleus | 56.25 | 28.36 |
| AT4G29730.1 | Thale cress | nucleus | 57.5 | 28.34 |
| CDY48711 | Canola | nucleus | 59.17 | 28.23 |
| AT2G19520.1 | Thale cress | nucleus | 59.58 | 28.21 |
| Bra031085.1-P | Field mustard | nucleus | 58.75 | 27.98 |
| CDY03358 | Canola | nucleus | 58.75 | 27.98 |
| Bra040678.1-P | Field mustard | nucleus | 57.92 | 27.97 |
| CDY21661 | Canola | nucleus | 58.75 | 27.87 |
| CDX82696 | Canola | nucleus | 50.0 | 27.27 |
| GSMUA_Achr7P09120_001 | Banana | nucleus | 47.08 | 24.84 |
| KRH10009 | Soybean | cytosol, mitochondrion, nucleus | 40.42 | 24.56 |
| GSMUA_Achr8P33950_001 | Banana | nucleus | 23.75 | 14.11 |
| GSMUA_Achr1P26410_001 | Banana | nucleus | 23.33 | 13.76 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 22.92 | 13.0 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 17.08 | 12.89 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 22.5 | 12.86 |
| GSMUA_Achr10P... | Banana | mitochondrion | 15.83 | 11.88 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 22.92 | 11.75 |
| GSMUA_Achr3P32330_001 | Banana | cytosol | 7.92 | 10.56 |
| CDY70287 | Canola | nucleus | 2.5 | 3.28 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P24160_001 | EnsemblPlants:GSMUA_Achr7T24160_001 | EnsemblPlantsGene:GSMUA_Achr7G24160_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR017986 | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF184 | PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0002950B11 | UniProt:M0TKA2 | MapMan:12.2.1.3 | : | : | : |
Description
WD-40 repeat-containing protein MSI4 [Source:GMGC_GENE;Acc:GSMUA_Achr7G24160_001]
Coordinates
chr7:-:26182550..26186178
Molecular Weight (calculated)
26114.6 Da
IEP (calculated)
6.338
GRAVY (calculated)
-0.391
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVLIWDDEA QPNRHPMLGA TESLPNLVRN EWSSYLLTSP YLQILTGKDK SVVLWSIHDH ISSLSESLSK LPVSSTPNSS GKQPTKAGNV KSSGSPTVGP
101: RGVYQGHEDT VEDVQFCPSS AQEFCSVGDD PCHILWDARV GSSLVVKVQP KAHNADLHCV DWNPHDQNLI LTGSADNSVC HEAAWSPDRA SVFGSAAEDG
201: FLNIWDHEKV GKKKESAGTR MPNSSPWFIL STCKGIGIKL
101: RGVYQGHEDT VEDVQFCPSS AQEFCSVGDD PCHILWDARV GSSLVVKVQP KAHNADLHCV DWNPHDQNLI LTGSADNSVC HEAAWSPDRA SVFGSAAEDG
201: FLNIWDHEKV GKKKESAGTR MPNSSPWFIL STCKGIGIKL
001: MESEAAATVQ ATRPRRAPRT PVTAILTDKR RRKPKSNNES QLPFLLQQSQ KATVDDTYSQ WKTLLPILYD SFVNHTLVWP SLSCRWGPQL EQAGSKTQRL
101: YLSEQTNGSV PNTLVIANCE TVNRQLNEKA HSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDIL IWNTETQPDR YAVLGAPDSR PDLLLIGHQD
201: DAEFALAMCP TEPFVLSGGK DKSVILWNIQ DHITMAGSDS KSPGSSFKQT GEGSDKTGGP SVGPRGIYNG HKDTVEDVAF CPSSAQEFCS VGDDSCLMLW
301: DARTGTSPAM KVEKAHDADL HCVDWNPHDN NLILTGSADN TVRVFDRRNL TSNGVGSPVY KFEGHRAAVL CVQWSPDKSS VFGSSAEDGL LNIWDCDRVG
401: KKSERATKTP DGLFFQHAGH RFSRLNSNSL ACLSLLLSSV ESIISSCISS
101: YLSEQTNGSV PNTLVIANCE TVNRQLNEKA HSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDIL IWNTETQPDR YAVLGAPDSR PDLLLIGHQD
201: DAEFALAMCP TEPFVLSGGK DKSVILWNIQ DHITMAGSDS KSPGSSFKQT GEGSDKTGGP SVGPRGIYNG HKDTVEDVAF CPSSAQEFCS VGDDSCLMLW
301: DARTGTSPAM KVEKAHDADL HCVDWNPHDN NLILTGSADN TVRVFDRRNL TSNGVGSPVY KFEGHRAAVL CVQWSPDKSS VFGSSAEDGL LNIWDCDRVG
401: KKSERATKTP DGLFFQHAGH RFSRLNSNSL ACLSLLLSSV ESIISSCISS
Arabidopsis Description
MSI5WD-40 repeat-containing protein MSI5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU78]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.