Factsheet for GSMUA_Achr8P09420_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0132400-01	Rice	nucleus	25.85	79.08
VIT_11s0016g02270.t01	Wine grape	nucleus	76.5	75.53
KRH58776	Soybean	nucleus	74.15	73.36
Os11t0134500-01	Rice	nucleus	72.65	73.12
PGSC0003DMT400034220	Potato	nucleus	72.86	72.71
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	73.29	71.61
TraesCS4B01G131200.1	Wheat	nucleus	73.72	71.58
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	73.5	71.37
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	73.5	71.37
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.24	71.22
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	73.29	71.16
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	46.15	70.82
Solyc07g039200.2.1	Tomato	nucleus	69.87	70.78
Zm00001d010850_P003	Maize	plasma membrane	72.22	70.27
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	71.58	70.08
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	70.09	69.94
CDY48712	Canola	plastid	70.09	69.64
CDY03357	Canola	plastid	70.09	69.34
KRH42676	Soybean	nucleus	72.86	69.03
CDY21659	Canola	nucleus	69.66	68.92
CDX81935	Canola	nucleus	69.66	68.63
OQU82815	Sorghum	mitochondrion	66.24	67.54
Bra040681.1-P	Field mustard	cytosol	51.92	67.13
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.23	67.08
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	54.27	67.02
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	69.02	66.87
Solyc05g014090.1.1	Tomato	mitochondrion	56.41	66.5
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	64.53	65.23
CDX82701	Canola	nucleus	52.99	63.92
CDY35872	Canola	cytosol, nucleus, plastid	45.3	62.35
GSMUA_Achr8P33950_001	Banana	nucleus	24.36	28.22
GSMUA_Achr1P26410_001	Banana	nucleus	22.86	26.29
GSMUA_Achr4P31680_001	Banana	nucleus	22.86	25.3
GSMUA_Achr5P02390_001	Banana	cytosol	22.65	25.24
GSMUA_Achr6P14510_001	Banana	cytosol, mitochondrion, peroxisome, plastid	16.24	23.9
GSMUA_Achr4P08720_001	Banana	cytosol	20.51	23.59
GSMUA_Achr7P24160_001	Banana	nucleus	11.75	22.92
GSMUA_Achr10P...	Banana	mitochondrion	15.38	22.5
GSMUA_Achr7P09120_001	Banana	nucleus	19.23	19.78
GSMUA_Achr3P32330_001	Banana	cytosol	7.05	18.33
Os12t0132300-02	Rice	cytosol	0.85	2.19
Os11t0134400-00	Rice	cytosol	0.85	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr8G09420_001	EnsemblPlants:GSMUA_Achr8P09420_001	EnsemblPlants:GSMUA_Achr8T09420_001
InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TNZ5	PFAM:PF00400
PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002954A43	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Putative Glutamate-rich WD repeat-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G09420_001]

Coordinates

chr8:-:6617089..6622691

Molecular Weight (calculated)

51559.9 Da

IEP (calculated)

4.744

GRAVY (calculated)

-0.408

Length

468 amino acids

Sequence
(BLAST)

001: MVRSLKNPKK AKRKNKESKK SESSSVPSAP AKVWQPGVDQ LEEGEELQFD PSTYNYLRAF SIGWPCLSFD IVHDSLGLVR SEFPHTFYGV AGTQAEQASW
101: NYLGIFKLSN ISGKKRELVP VSTADNDVDM DSESSSDEDD DDEDDKSSQP VLHLHKVAHQ GCVNRIRSMI QRPHICATWA DTGHVQVWDI STLLNALAES
201: VSDTTVGGNS IHRLSPIVKF GGHKDEGYAI DWSPIVPGRL VSGDCNSSIH LWEPSAETWN VDSSPFVGHA ASVEDLQWSP TEADVFASCS VDGTIAIWDT
301: RLGKSPALSV KAHNTDVNVI SWNRLASCMI ASGSDDGTFS IRDLRLIKGD SLVAHFEYHK QPITSIEWSP HEASTLAVAS ADNQLTIWDL SLEKDEEEEA
401: EFKAKMKEQV NVAQDLPPQL LFVHQGQKDL KELHWHTQIP GMVTSTAADG FNILMPANID TTLPSTDA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.